Variant report

Variant	rs6034338
Chromosome Location	chr20:15949189-15949190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1339255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1416557	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16996904	1.00[CEU][hapmap]
rs4814418	1.00[EUR][1000 genomes]
rs4814421	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6034337	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6043627	1.00[EUR][1000 genomes]
rs6043632	1.00[EUR][1000 genomes]
rs6043638	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6043662	1.00[CEU][hapmap]
rs6080022	1.00[EUR][1000 genomes]
rs6131746	0.86[AMR][1000 genomes]
rs708979	1.00[CEU][hapmap]
rs7352227	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs927562	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15923000-15951200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15943000-15954600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr20:15944200-15952200	Strong transcription	Primary B cells from cord blood	blood
4	chr20:15947400-15951400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr20:15948600-15949800	ZNF genes & repeats	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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