The 2.0 version of rSNPBase

Variant report

Variant rs1417656
Chromosome Location chr6:4995715-4995716
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:4983000-4997600 Weak transcription Psoas Muscle Psoas
2 chr6:4985600-4997000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr6:4985600-4997000 Weak transcription Gastric stomach
4 chr6:4985600-5001000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
5 chr6:4985600-5003000 Weak transcription HUVEC blood vessel
6 chr6:4985600-5003200 Weak transcription Hela-S3 cervix
7 chr6:4985800-5003600 Weak transcription H9 Cell Line embryonic stem cell
8 chr6:4987600-5003000 Weak transcription GM12878-XiMat blood
9 chr6:4987600-5003600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
10 chr6:4988000-5001400 Weak transcription NHEK skin
11 chr6:4988200-5003600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr6:4988800-5001200 Weak transcription Brain Hippocampus Middle brain
13 chr6:4988800-5001200 Weak transcription K562 blood
14 chr6:4988800-5003600 Weak transcription HMEC breast
15 chr6:4989200-5003600 Weak transcription Primary T killer naive cells fromperipheralblood blood
16 chr6:4989400-4995800 Weak transcription Duodenum Smooth Muscle Duodenum
17 chr6:4990000-4996200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
18 chr6:4990000-5003600 Weak transcription Fetal Lung lung
19 chr6:4990200-5001200 Weak transcription HUES48 Cell Line embryonic stem cell
20 chr6:4990400-5001200 Weak transcription A549 lung
21 chr6:4990400-5003600 Weak transcription iPS-18 Cell Line embryonic stem cell
22 chr6:4990400-5003600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
23 chr6:4990600-4996400 Weak transcription Ovary ovary
24 chr6:4990600-4996600 Weak transcription Thymus Thymus
25 chr6:4990800-5003000 Weak transcription Fetal Heart heart
26 chr6:4990800-5003600 Weak transcription Right Ventricle heart
27 chr6:4991000-5002600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr6:4991200-5002400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
29 chr6:4991400-4998000 Weak transcription Osteobl bone
30 chr6:4991400-5001200 Weak transcription HSMMtube muscle
31 chr6:4991600-4996400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
32 chr6:4991600-4996400 Weak transcription Spleen Spleen
33 chr6:4991800-4997400 Weak transcription Brain Anterior Caudate brain
34 chr6:4992200-5003400 Weak transcription NH-A brain
35 chr6:4992400-4996400 Weak transcription Lung lung
36 chr6:4992400-5003600 Weak transcription Small Intestine intestine
37 chr6:4992800-5003600 Weak transcription Brain Germinal Matrix brain
38 chr6:4993000-4998000 Weak transcription HUES64 Cell Line embryonic stem cell
39 chr6:4993000-5001000 Weak transcription Skeletal Muscle Male skeletal muscle
40 chr6:4993000-5003600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
41 chr6:4993200-4997000 Weak transcription Colonic Mucosa Colon
42 chr6:4993200-4997200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
43 chr6:4993400-4996200 Weak transcription NHLF lung
44 chr6:4993400-4996400 Weak transcription Rectal Mucosa Donor 29 rectum
45 chr6:4993400-4996400 Weak transcription HSMM muscle
46 chr6:4993400-4996600 Weak transcription Primary B cells from peripheral blood blood
47 chr6:4993400-5001000 Weak transcription H1 Cell Line embryonic stem cell
48 chr6:4993400-5002400 Strong transcription Primary hematopoietic stem cells short term culture blood
49 chr6:4993400-5003400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
50 chr6:4993600-4996000 Weak transcription Brain Cingulate Gyrus brain

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Last update: Aug 31, 2015