Variant report

Variant	rs2764142
Chromosome Location	chr6:5024363-5024364
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:5017586..5019147-chr6:5023305..5024855,2	K562	blood:
2	chr6:5023225..5025440-chr6:5048113..5049732,2	MCF-7	breast:
3	chr6:5022332..5024796-chr6:5026055..5028237,3	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs11759046	1.00[ASN][1000 genomes]
rs1417656	1.00[ASN][1000 genomes]
rs1749154	1.00[ASN][1000 genomes]
rs1749161	1.00[ASN][1000 genomes]
rs1771865	1.00[ASN][1000 genomes]
rs1771866	1.00[ASN][1000 genomes]
rs1771867	1.00[ASN][1000 genomes]
rs1771871	1.00[ASN][1000 genomes]
rs1886567	1.00[ASN][1000 genomes]
rs2326574	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs2764102	1.00[ASN][1000 genomes]
rs2764103	1.00[ASN][1000 genomes]
rs2764104	1.00[ASN][1000 genomes]
rs2764105	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs2764106	1.00[ASN][1000 genomes]
rs2764107	1.00[ASN][1000 genomes]
rs2764109	1.00[ASN][1000 genomes]
rs2764112	1.00[ASN][1000 genomes]
rs2764114	1.00[ASN][1000 genomes]
rs2764115	1.00[ASN][1000 genomes]
rs2764116	1.00[ASN][1000 genomes]
rs2764120	1.00[ASN][1000 genomes]
rs2764121	1.00[ASN][1000 genomes]
rs2764123	1.00[ASN][1000 genomes]
rs2764124	1.00[ASN][1000 genomes]
rs2764125	1.00[ASN][1000 genomes]
rs2764126	1.00[ASN][1000 genomes]
rs2764127	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764129	1.00[ASN][1000 genomes]
rs2764130	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764134	1.00[ASN][1000 genomes]
rs2764135	1.00[ASN][1000 genomes]
rs2764137	1.00[ASN][1000 genomes]
rs2764138	1.00[ASN][1000 genomes]
rs2764139	1.00[ASN][1000 genomes]
rs2764141	1.00[ASN][1000 genomes]
rs2764143	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2764145	1.00[ASN][1000 genomes]
rs2764149	1.00[ASN][1000 genomes]
rs2764151	1.00[ASN][1000 genomes]
rs2764152	1.00[ASN][1000 genomes]
rs2764166	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764169	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764185	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2764191	1.00[ASN][1000 genomes]
rs2764192	1.00[ASN][1000 genomes]
rs2793240	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs2793241	1.00[ASN][1000 genomes]
rs2793242	1.00[ASN][1000 genomes]
rs2793245	1.00[ASN][1000 genomes]
rs2793247	1.00[ASN][1000 genomes]
rs2793249	1.00[ASN][1000 genomes]
rs2793250	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2793251	1.00[ASN][1000 genomes]
rs2985675	1.00[ASN][1000 genomes]
rs2985676	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2994694	1.00[ASN][1000 genomes]
rs34471690	1.00[ASN][1000 genomes]
rs4960056	1.00[ASN][1000 genomes]
rs62385141	1.00[ASN][1000 genomes]
rs6905084	1.00[ASN][1000 genomes]
rs6912320	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs795809	1.00[ASN][1000 genomes]
rs795810	1.00[ASN][1000 genomes]
rs813840	0.81[EUR][1000 genomes]
rs912709	1.00[ASN][1000 genomes]
rs912710	1.00[ASN][1000 genomes]
rs912711	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs947153	1.00[ASN][1000 genomes]
rs9502260	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv462622	chr6:4904380-5172009	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv600871	chr6:4904380-5172009	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv1033905	chr6:4955826-5080904	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv600872	chr6:4975313-5342190	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
8	nsv1031837	chr6:4996667-5418726	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
9	nsv1017380	chr6:5007870-5152551	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5005200-5025800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:5013400-5025600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:5013600-5026200	Weak transcription	Ovary	ovary
4	chr6:5014800-5025800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:5015200-5025800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:5015800-5025800	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:5017400-5026000	Weak transcription	Esophagus	oesophagus
8	chr6:5018200-5025800	Weak transcription	Left Ventricle	heart
9	chr6:5018800-5025800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr6:5019000-5026200	Weak transcription	Gastric	stomach
11	chr6:5020600-5026200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr6:5020800-5025800	Weak transcription	Spleen	Spleen
13	chr6:5020800-5026200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:5021000-5025600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:5021200-5025800	Weak transcription	Fetal Intestine Small	intestine
16	chr6:5022200-5025400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:5022200-5025800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:5022200-5026200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:5022400-5026000	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:5023000-5025600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:5023000-5025600	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:5023000-5025800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr6:5023200-5025800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr6:5023400-5025800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:5023600-5024800	Strong transcription	Fetal Stomach	stomach
26	chr6:5023600-5026000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr6:5023800-5024600	Strong transcription	Primary T cells from cord blood	blood
28	chr6:5024000-5026000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:5024000-5026200	Enhancers	HepG2	liver
30	chr6:5024200-5024400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:5024200-5024400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:5024200-5024600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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