Variant report

Variant	rs1418710
Chromosome Location	chr10:97545465-97545466
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10748644	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882658	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11188426	0.83[ASN][1000 genomes]
rs11188427	0.83[ASN][1000 genomes]
rs12783226	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2861150	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3176894	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34037152	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35087577	0.84[ASN][1000 genomes]
rs4244321	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4481960	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4918959	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4918963	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4918965	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67707291	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7090916	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7096610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72813744	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1052213	chr10:97536795-97561941	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1418710	ENTPD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97540400-97545800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:97541400-97547800	Enhancers	Primary B cells from cord blood	blood
3	chr10:97541400-97548400	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:97543000-97552200	Weak transcription	Fetal Stomach	stomach
5	chr10:97543200-97545600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:97543200-97552200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:97543600-97545600	Enhancers	Stomach Smooth Muscle	stomach
8	chr10:97543600-97546200	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
9	chr10:97543600-97552200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:97543800-97547600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:97544000-97546400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:97544400-97552400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:97544600-97545600	Weak transcription	Colonic Mucosa	Colon
14	chr10:97544600-97546800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr10:97544600-97550600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr10:97544600-97552200	Weak transcription	Brain Anterior Caudate	brain
17	chr10:97544600-97552600	Weak transcription	Brain Hippocampus Middle	brain
18	chr10:97544800-97550600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:97544800-97554200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr10:97544800-97558200	Weak transcription	Spleen	Spleen
21	chr10:97545000-97547200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:97545000-97550600	Weak transcription	Colon Smooth Muscle	Colon
23	chr10:97545200-97545800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr10:97545200-97546200	Enhancers	Aorta	Aorta
25	chr10:97545200-97552600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr10:97545400-97552000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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