Variant report

Variant	rs142044012
Chromosome Location	chr10:6654758-6654759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:6614415..6616986-chr10:6653036..6655207,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053440	chr10:6354798-6669469	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1047309	chr10:6495583-6714060	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv437095	chr10:6649064-6666823	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2757365	chr10:6650991-6665349	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759730	chr10:6650991-6665349	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1047226	chr10:6651427-6664154	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv1835436	chr10:6651941-6664154	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv820451	chr10:6652116-6664424	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv1795177	chr10:6652184-6663835	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv1818718	chr10:6652184-6663835	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv1829311	chr10:6652184-6663835	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv8601	chr10:6652225-6665468	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
13	esv3331955	chr10:6653442-6664446	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
14	nsv819619	chr10:6653814-6664196	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	esv1839093	chr10:6654117-6664305	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
16	nsv1055086	chr10:6654117-6664495	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	esv3464730	chr10:6654238-6664297	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
18	esv3464619	chr10:6654273-6664285	Enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	esv3464508	chr10:6654309-6664239	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	esv1820467	chr10:6654362-6665761	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
21	esv3464841	chr10:6654406-6664191	Enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
22	esv13021	chr10:6654432-6664201	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6651000-6656400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:6651200-6661600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:6651600-6654800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr10:6651600-6654800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:6651800-6655400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:6651800-6663200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:6652200-6655200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr10:6652200-6655200	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr10:6652400-6655000	Enhancers	NHEK	skin
10	chr10:6652400-6655200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:6652400-6655400	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr10:6652400-6655400	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr10:6652600-6654800	Enhancers	Primary hematopoietic stem cells	blood
14	chr10:6652600-6654800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr10:6652600-6654800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr10:6652600-6654800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr10:6652600-6654800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:6652600-6654800	Enhancers	HMEC	breast
19	chr10:6652600-6655000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr10:6652600-6655000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:6652800-6655000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:6653000-6654800	Enhancers	Primary T cells from cord blood	blood
23	chr10:6653000-6654800	Enhancers	Dnd41	blood
24	chr10:6654000-6655200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:6654600-6654800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:6654600-6654800	Enhancers	Primary T cells fromperipheralblood	blood
27	chr10:6654600-6660200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links