Variant report

Variant	rs142119185
Chromosome Location	chr3:119279495-119279496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:39)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:39 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:119278283-119279546	Raji	blood:	n/a	n/a
2	POLR2A	chr3:119278320-119279538	GM12878	blood:	n/a	n/a
3	ATF2	chr3:119278971-119279515	GM12878	blood:	n/a	n/a
4	POLR2A	chr3:119277649-119279606	GM19099	blood:	n/a	n/a
5	POLR2A	chr3:119278223-119279588	GM12891	blood:	n/a	n/a
6	POLR2A	chr3:119277583-119279649	GM12891	blood:	n/a	n/a
7	WRNIP1	chr3:119279397-119279511	GM12878	blood:	n/a	n/a
8	PML	chr3:119277538-119279835	GM12878	blood:	n/a	n/a
9	POLR2A	chr3:119278895-119279573	GM12891	blood:	n/a	n/a
10	STAT5A	chr3:119277527-119279616	GM12878	blood:	n/a	n/a
11	POLR2A	chr3:119278285-119279529	GM12878	blood:	n/a	n/a
12	POLR2A	chr3:119277989-119279676	GM12892	blood:	n/a	n/a
13	BCLAF1	chr3:119278013-119279568	GM12878	blood:	n/a	n/a
14	POLR2A	chr3:119278341-119279509	GM12878	blood:	n/a	n/a
15	MTA3	chr3:119277535-119279709	GM12878	blood:	n/a	n/a
16	RUNX3	chr3:119277625-119279563	GM12878	blood:	n/a	n/a
17	POLR2A	chr3:119277630-119279599	GM18505	blood:	n/a	n/a
18	CHD1	chr3:119277633-119279564	GM12878	blood:	n/a	n/a
19	BCLAF1	chr3:119278964-119279757	GM12878	blood:	n/a	n/a
20	NFATC1	chr3:119277708-119279640	GM12878	blood:	n/a	n/a
21	POLR2A	chr3:119278009-119279610	GM12892	blood:	n/a	n/a
22	POLR2A	chr3:119279286-119279604	GM12891	blood:	n/a	n/a
23	POLR2A	chr3:119277531-119279675	GM12892	blood:	n/a	n/a
24	POLR2A	chr3:119277695-119279583	GM12892	blood:	n/a	n/a
25	ELK1	chr3:119279464-119279514	GM12878	blood:	n/a	n/a
26	ZNF384	chr3:119278868-119279627	GM12878	blood:	n/a	n/a
27	POLR2A	chr3:119278144-119279566	GM12878	blood:	n/a	n/a
28	POLR2A	chr3:119277494-119279661	GM12892	blood:	n/a	n/a
29	NFIC	chr3:119277612-119279873	GM12878	blood:	n/a	n/a
30	POLR2A	chr3:119277232-119279740	GM12878	blood:	n/a	n/a
31	STAT5A	chr3:119279258-119279798	GM12878	blood:	n/a	n/a
32	POLR2A	chr3:119279422-119279503	GM12878	blood:	n/a	n/a
33	MTA3	chr3:119278262-119279689	GM12878	blood:	n/a	n/a
34	RELA	chr3:119277730-119279557	GM15510	blood:	n/a	n/a
35	POLR2A	chr3:119277643-119279552	GM12891	blood:	n/a	n/a
36	RUNX3	chr3:119278298-119279498	GM12878	blood:	n/a	n/a
37	TBP	chr3:119279134-119279663	GM12878	blood:	n/a	n/a
38	POLR2A	chr3:119277580-119279823	GM12878	blood:	n/a	n/a
39	POLR2A	chr3:119277572-119279620	GM12878	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119181171..119183307-chr3:119278520..119281290,2	MCF-7	breast:
2	chr3:119218133..119220642-chr3:119277892..119280066,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADPRH-1	chr3:119279389-119279592	XLOC_002777
2	lnc-ADPRH-1	chr3:119279388-119279592	NONHSAT091393

No data

Variant related genes	Relation type
CD80	TF binding region
ENSG00000176142	Chromatin interaction
ENSG00000113845	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829695	chr3:119178890-119367996	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	esv1831824	chr3:119263607-119402474	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv523837	chr3:119278848-119288848	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119267600-119298000	Weak transcription	Fetal Lung	lung
2	chr3:119271400-119281400	Weak transcription	Right Ventricle	heart
3	chr3:119275000-119281200	Weak transcription	Right Atrium	heart
4	chr3:119275000-119281200	Weak transcription	Spleen	Spleen
5	chr3:119277000-119281200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:119278400-119282200	Enhancers	Primary B cells from peripheral blood	blood
7	chr3:119278600-119279600	Flanking Active TSS	GM12878-XiMat	blood
8	chr3:119278800-119281200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:119278800-119281200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr3:119278800-119281200	Weak transcription	Pancreas	Pancrea
11	chr3:119278800-119281400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:119279000-119280400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr3:119279000-119281200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr3:119279000-119281200	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr3:119279000-119281200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:119279000-119281200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:119279000-119281200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:119279000-119281200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:119279000-119281400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr3:119279000-119281400	Weak transcription	Fetal Thymus	thymus
21	chr3:119279200-119280400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr3:119279200-119281200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:119279200-119281200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr3:119279200-119287400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr3:119279400-119280400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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