Variant report

Variant	rs14217
Chromosome Location	chr6:37448809-37448810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37448409..37450836-chr6:37456466..37458234,2	MCF-7	breast:
2	chr6:37448012..37449708-chr6:37526541..37528719,2	MCF-7	breast:
3	chr6:37448210..37451010-chr6:37482118..37484936,2	K562	blood:
4	chr6:37448778..37451469-chr6:37463694..37466649,2	K562	blood:
5	chr6:37444354..37450261-chr6:37451286..37455412,6	K562	blood:
6	chr6:37448384..37450542-chr6:37453488..37455291,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs41272220	0.84[EUR][1000 genomes]
rs41272226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296221	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37424600-37451600	Strong transcription	Fetal Thymus	thymus
2	chr6:37435800-37452000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr6:37436200-37457200	Strong transcription	Primary T cells from cord blood	blood
4	chr6:37436400-37454600	Strong transcription	Thymus	Thymus
5	chr6:37436600-37452000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:37436600-37452000	Strong transcription	Fetal Lung	lung
7	chr6:37436800-37451800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:37436800-37452200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:37437000-37451800	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:37437400-37454400	Strong transcription	Dnd41	blood
11	chr6:37437600-37451400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:37437600-37451800	Strong transcription	Primary B cells from peripheral blood	blood
13	chr6:37437600-37452000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr6:37437800-37451600	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr6:37438000-37451600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:37438000-37454600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:37438200-37449000	Strong transcription	Brain Inferior Temporal Lobe	brain
18	chr6:37438200-37449600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:37438200-37451600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:37438200-37451600	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr6:37438200-37451800	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:37438200-37452000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:37438200-37452000	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr6:37438200-37452400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:37438200-37454400	Strong transcription	Placenta	Placenta
26	chr6:37438400-37451000	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr6:37438400-37451200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr6:37438400-37451400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr6:37438400-37451400	Strong transcription	Colonic Mucosa	Colon
30	chr6:37438400-37451600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
31	chr6:37438400-37451800	Strong transcription	Duodenum Mucosa	Duodenum
32	chr6:37438400-37452000	Strong transcription	Aorta	Aorta
33	chr6:37438400-37452000	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr6:37438400-37453400	Strong transcription	Fetal Intestine Large	intestine
35	chr6:37438600-37449200	Strong transcription	Brain Cingulate Gyrus	brain
36	chr6:37438600-37451800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:37438600-37453000	Strong transcription	Lung	lung
38	chr6:37438600-37454600	Strong transcription	Spleen	Spleen
39	chr6:37439000-37452000	Strong transcription	Ovary	ovary
40	chr6:37439000-37452200	Strong transcription	HepG2	liver
41	chr6:37439200-37451600	Strong transcription	Placenta Amnion	Placenta Amnion
42	chr6:37439200-37452000	Strong transcription	Pancreas	Pancrea
43	chr6:37439200-37453000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:37439200-37456400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:37439200-37456400	Strong transcription	Fetal Intestine Small	intestine
46	chr6:37439400-37452200	Strong transcription	NHLF	lung
47	chr6:37440200-37449200	Weak transcription	Fetal Kidney	kidney
48	chr6:37440800-37451200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr6:37441600-37452000	Strong transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:37441800-37451000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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