Variant report

Variant	rs9296221
Chromosome Location	chr6:37488475-37488476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37464981..37466584-chr6:37488275..37490283,2	K562	blood:
2	chr6:37486519..37488969-chr6:37490130..37493160,3	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs14217	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs41272226	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1016310	chr6:37473075-37528469	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37486400-37488600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:37486400-37488600	Weak transcription	Fetal Brain Female	brain
3	chr6:37486400-37488800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:37486400-37490400	Enhancers	Primary T cells fromperipheralblood	blood
5	chr6:37486400-37490800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:37486600-37489800	Enhancers	Fetal Thymus	thymus
7	chr6:37486800-37488600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:37486800-37488600	Weak transcription	Fetal Brain Male	brain
9	chr6:37486800-37491400	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr6:37487400-37490800	Weak transcription	Right Atrium	heart
11	chr6:37487400-37491000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:37487400-37492400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr6:37487600-37488600	Weak transcription	Primary T cells from cord blood	blood
14	chr6:37487600-37488600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:37487600-37498200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:37488200-37489200	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:37488200-37489800	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr6:37488400-37488600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:37488400-37489000	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:37488400-37489200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:37488400-37489200	Enhancers	Dnd41	blood
22	chr6:37488400-37489400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:37488400-37489400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:37488400-37489400	Enhancers	Thymus	Thymus
25	chr6:37488400-37489400	Enhancers	HSMM	muscle
26	chr6:37488400-37489600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:37488400-37489800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr6:37488400-37491000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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