Variant report

Variant	rs1421844
Chromosome Location	chr5:115734080-115734081
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs153614	0.82[YRI][hapmap]
rs168833	0.82[YRI][hapmap]
rs17139715	0.92[AFR][1000 genomes]
rs55696513	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57023384	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67753547	0.86[ASN][1000 genomes]
rs72810708	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs785368	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522616	chr5:115725791-115744515	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv1845769	chr5:115730278-115763979	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1421844	COMMD10	cis	parietal	SCAN

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115697600-115748400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:115707600-115748400	Weak transcription	Fetal Intestine Large	intestine
3	chr5:115708600-115754000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:115718400-115737000	Weak transcription	Primary B cells from cord blood	blood
5	chr5:115718600-115748400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:115719400-115734800	Weak transcription	Primary T cells from cord blood	blood
7	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr5:115724800-115745600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:115724800-115749200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:115730400-115769600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr5:115731000-115746800	Weak transcription	Fetal Intestine Small	intestine
13	chr5:115731000-115757000	Weak transcription	Gastric	stomach
14	chr5:115731800-115738000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:115731800-115741000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:115732000-115747000	Weak transcription	Aorta	Aorta
17	chr5:115732400-115737000	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr5:115732400-115737400	Weak transcription	Brain Angular Gyrus	brain
19	chr5:115732400-115740000	Weak transcription	Adipose Nuclei	Adipose
20	chr5:115732600-115735400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr5:115732600-115735400	Weak transcription	Fetal Stomach	stomach
22	chr5:115732600-115737200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr5:115732600-115737200	Weak transcription	Brain Substantia Nigra	brain
24	chr5:115732600-115737800	Weak transcription	Brain Hippocampus Middle	brain
25	chr5:115732600-115738000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr5:115732600-115746200	Weak transcription	Spleen	Spleen
27	chr5:115732600-115760200	Weak transcription	Liver	Liver
28	chr5:115732800-115735200	Weak transcription	Fetal Muscle Leg	muscle
29	chr5:115732800-115741000	Weak transcription	Lung	lung
30	chr5:115732800-115745600	Weak transcription	Left Ventricle	heart
31	chr5:115732800-115745600	Weak transcription	Ovary	ovary
32	chr5:115732800-115745600	Weak transcription	Right Atrium	heart
33	chr5:115733000-115745600	Weak transcription	Right Ventricle	heart
34	chr5:115733200-115738200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr5:115733200-115738800	Weak transcription	Psoas Muscle	Psoas
36	chr5:115733200-115740200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr5:115733800-115754400	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr5:115734000-115734200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr5:115734000-115742400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr5:115734000-115744600	Weak transcription	Pancreas	Pancrea

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