Variant report

Variant	rs17139715
Chromosome Location	chr5:115746832-115746833
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11241390	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12521753	0.86[ASN][1000 genomes]
rs12654057	0.83[AFR][1000 genomes]
rs1421844	0.92[AFR][1000 genomes]
rs1529490	0.86[ASN][1000 genomes]
rs153614	0.83[YRI][hapmap]
rs168833	0.83[YRI][hapmap]
rs17139649	0.85[AFR][1000 genomes]
rs17139712	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17139724	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17139732	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2033191	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55696513	0.91[AFR][1000 genomes]
rs66849830	0.82[ASN][1000 genomes]
rs72808983	0.83[AFR][1000 genomes]
rs72810708	0.92[AFR][1000 genomes]
rs72810714	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs72810715	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72810777	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72810778	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs784482	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845769	chr5:115730278-115763979	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115697600-115748400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:115707600-115748400	Weak transcription	Fetal Intestine Large	intestine
3	chr5:115708600-115754000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:115718600-115748400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr5:115724800-115749200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:115730400-115769600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:115731000-115757000	Weak transcription	Gastric	stomach
10	chr5:115732000-115747000	Weak transcription	Aorta	Aorta
11	chr5:115732600-115760200	Weak transcription	Liver	Liver
12	chr5:115733800-115754400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr5:115734200-115755200	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr5:115736200-115753600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr5:115737600-115751200	Weak transcription	Primary B cells from cord blood	blood
16	chr5:115741800-115751200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:115744600-115747400	Enhancers	Pancreas	Pancrea
18	chr5:115745200-115747800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr5:115745200-115747800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr5:115745400-115747400	Enhancers	Fetal Muscle Leg	muscle
21	chr5:115745400-115747400	Enhancers	Psoas Muscle	Psoas
22	chr5:115745600-115747000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr5:115745600-115747000	Enhancers	Stomach Smooth Muscle	stomach
24	chr5:115745600-115747200	Enhancers	Right Ventricle	heart
25	chr5:115745600-115747400	Enhancers	Left Ventricle	heart
26	chr5:115745600-115747400	Enhancers	Ovary	ovary
27	chr5:115745600-115747400	Enhancers	Right Atrium	heart
28	chr5:115745600-115748000	Enhancers	Fetal Muscle Trunk	muscle
29	chr5:115745600-115748000	Enhancers	Fetal Stomach	stomach
30	chr5:115745800-115747400	Enhancers	Colon Smooth Muscle	Colon
31	chr5:115746000-115751000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr5:115746200-115747000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr5:115746200-115747200	Enhancers	Spleen	Spleen
34	chr5:115746200-115747400	Enhancers	Brain Anterior Caudate	brain
35	chr5:115746200-115747400	Enhancers	Brain Hippocampus Middle	brain
36	chr5:115746200-115747400	Enhancers	Brain Substantia Nigra	brain
37	chr5:115746200-115748000	Enhancers	Fetal Lung	lung
38	chr5:115746400-115747400	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr5:115746400-115747600	Enhancers	Fetal Kidney	kidney
40	chr5:115746400-115748000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr5:115746600-115747000	Enhancers	Fetal Brain Female	brain
42	chr5:115746600-115747200	Enhancers	Rectal Smooth Muscle	rectum
43	chr5:115746800-115747200	Strong transcription	Fetal Intestine Small	intestine
44	chr5:115746800-115747400	Enhancers	Brain Angular Gyrus	brain
45	chr5:115746800-115747400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr5:115746800-115747800	Enhancers	Lung	lung
47	chr5:115746800-115748000	Enhancers	Brain Cingulate Gyrus	brain
48	chr5:115746800-115756600	Strong transcription	Primary T cells from cord blood	blood

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