Variant report

Variant	rs11241390
Chromosome Location	chr5:115756397-115756398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12054776	0.88[EUR][1000 genomes]
rs17139712	0.83[AMR][1000 genomes]
rs17139715	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17139724	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17139732	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2033191	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57455155	0.90[EUR][1000 genomes]
rs66849830	0.90[ASN][1000 genomes]
rs72810714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72810715	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72810777	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72810778	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845769	chr5:115730278-115763979	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv4969	chr5:115753919-115767853	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:115730400-115769600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:115731000-115757000	Weak transcription	Gastric	stomach
5	chr5:115732600-115760200	Weak transcription	Liver	Liver
6	chr5:115746800-115756600	Strong transcription	Primary T cells from cord blood	blood
7	chr5:115747200-115760000	Weak transcription	Right Ventricle	heart
8	chr5:115747400-115760800	Weak transcription	Left Ventricle	heart
9	chr5:115747400-115760800	Weak transcription	Pancreas	Pancrea
10	chr5:115747800-115757600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr5:115747800-115764200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr5:115747800-115765600	Weak transcription	Lung	lung
13	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
14	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr5:115750200-115779400	Weak transcription	Fetal Intestine Small	intestine
16	chr5:115751200-115758800	Strong transcription	Primary B cells from cord blood	blood
17	chr5:115751600-115756400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:115751600-115757800	Weak transcription	Stomach Smooth Muscle	stomach
19	chr5:115751600-115774800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr5:115752000-115757000	Weak transcription	Spleen	Spleen
21	chr5:115752400-115756800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr5:115752800-115779400	Weak transcription	Fetal Intestine Large	intestine
23	chr5:115754000-115758400	Weak transcription	Psoas Muscle	Psoas
24	chr5:115754000-115759600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr5:115755000-115757200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr5:115755400-115757400	Enhancers	Adipose Nuclei	Adipose
27	chr5:115755600-115757200	Enhancers	Right Atrium	heart
28	chr5:115755600-115757200	Enhancers	K562	blood
29	chr5:115755800-115756600	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr5:115756000-115756600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr5:115756000-115756600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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