Variant report

Variant	rs17139732
Chromosome Location	chr5:115764800-115764801
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115762949..115765718-chr5:115769908..115771638,2	MCF-7	breast:
2	chr5:115763956..115765472-chr5:115766076..115768967,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11241389	0.81[ASN][1000 genomes]
rs11241390	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12054776	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17139715	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17139717	0.80[ASN][1000 genomes]
rs17139724	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2033191	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57455155	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61422287	0.81[ASN][1000 genomes]
rs66849830	0.96[ASN][1000 genomes]
rs72810714	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72810715	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72810777	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72810778	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4969	chr5:115753919-115767853	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:115730400-115769600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:115747800-115765600	Weak transcription	Lung	lung
5	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
6	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr5:115750200-115779400	Weak transcription	Fetal Intestine Small	intestine
8	chr5:115751600-115774800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr5:115752800-115779400	Weak transcription	Fetal Intestine Large	intestine
10	chr5:115756600-115768800	Weak transcription	Primary T cells from cord blood	blood
11	chr5:115757000-115774000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:115757200-115782000	Weak transcription	Gastric	stomach
13	chr5:115757400-115767200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:115757400-115775400	Weak transcription	Adipose Nuclei	Adipose
15	chr5:115758000-115769200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:115758800-115768400	Weak transcription	Primary B cells from cord blood	blood
17	chr5:115759000-115773600	Weak transcription	Fetal Kidney	kidney
18	chr5:115759800-115776400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:115760000-115781400	Weak transcription	Primary B cells from peripheral blood	blood
20	chr5:115761000-115764800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:115761600-115773400	Weak transcription	Liver	Liver
22	chr5:115761600-115773400	Weak transcription	HepG2	liver
23	chr5:115762600-115771800	Weak transcription	Left Ventricle	heart
24	chr5:115764200-115765000	Enhancers	Stomach Smooth Muscle	stomach
25	chr5:115764400-115765200	Enhancers	Brain Cingulate Gyrus	brain
26	chr5:115764400-115768400	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr5:115764600-115765200	Enhancers	Brain Angular Gyrus	brain
28	chr5:115764600-115765200	Enhancers	Brain Hippocampus Middle	brain
29	chr5:115764600-115765400	Enhancers	Brain Substantia Nigra	brain

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