Variant report

Variant	rs72810778
Chromosome Location	chr5:115762680-115762681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11241389	0.81[ASN][1000 genomes]
rs11241390	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12054776	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17139715	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17139717	0.80[ASN][1000 genomes]
rs17139724	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17139732	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2033191	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57455155	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61422287	0.81[ASN][1000 genomes]
rs66849830	0.96[ASN][1000 genomes]
rs72810714	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72810715	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72810777	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845769	chr5:115730278-115763979	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv4969	chr5:115753919-115767853	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:115730400-115769600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:115747800-115764200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:115747800-115765600	Weak transcription	Lung	lung
6	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
7	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr5:115750200-115779400	Weak transcription	Fetal Intestine Small	intestine
9	chr5:115751600-115774800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr5:115752800-115779400	Weak transcription	Fetal Intestine Large	intestine
11	chr5:115756600-115768800	Weak transcription	Primary T cells from cord blood	blood
12	chr5:115757000-115774000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:115757200-115782000	Weak transcription	Gastric	stomach
14	chr5:115757400-115767200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:115757400-115775400	Weak transcription	Adipose Nuclei	Adipose
16	chr5:115758000-115769200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:115758800-115768400	Weak transcription	Primary B cells from cord blood	blood
18	chr5:115759000-115763800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr5:115759000-115773600	Weak transcription	Fetal Kidney	kidney
20	chr5:115759800-115776400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr5:115760000-115764200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr5:115760000-115781400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr5:115761000-115764800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr5:115761600-115773400	Weak transcription	Liver	Liver
25	chr5:115761600-115773400	Weak transcription	HepG2	liver
26	chr5:115762600-115771800	Weak transcription	Left Ventricle	heart

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