Variant report

Variant	rs17139724
Chromosome Location	chr5:115759066-115759067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11241389	0.81[ASN][1000 genomes]
rs11241390	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12054776	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17139715	0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17139717	0.81[ASN][1000 genomes]
rs17139732	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2033191	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs254082	0.80[ASN][1000 genomes]
rs57455155	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61422287	0.81[ASN][1000 genomes]
rs66849830	0.97[ASN][1000 genomes]
rs72810714	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72810715	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72810777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72810778	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845769	chr5:115730278-115763979	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv4969	chr5:115753919-115767853	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:115730400-115769600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:115732600-115760200	Weak transcription	Liver	Liver
5	chr5:115747200-115760000	Weak transcription	Right Ventricle	heart
6	chr5:115747400-115760800	Weak transcription	Left Ventricle	heart
7	chr5:115747400-115760800	Weak transcription	Pancreas	Pancrea
8	chr5:115747800-115764200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:115747800-115765600	Weak transcription	Lung	lung
10	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
11	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr5:115750200-115779400	Weak transcription	Fetal Intestine Small	intestine
13	chr5:115751600-115774800	Weak transcription	Fetal Muscle Trunk	muscle
14	chr5:115752800-115779400	Weak transcription	Fetal Intestine Large	intestine
15	chr5:115754000-115759600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr5:115756600-115768800	Weak transcription	Primary T cells from cord blood	blood
17	chr5:115757000-115774000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:115757200-115759400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:115757200-115782000	Weak transcription	Gastric	stomach
20	chr5:115757400-115767200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:115757400-115775400	Weak transcription	Adipose Nuclei	Adipose
22	chr5:115758000-115769200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:115758200-115760000	Enhancers	Ovary	ovary
24	chr5:115758400-115759600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr5:115758800-115759200	Enhancers	Colon Smooth Muscle	Colon
26	chr5:115758800-115759200	Enhancers	Right Atrium	heart
27	chr5:115758800-115759600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr5:115758800-115762200	Weak transcription	Fetal Stomach	stomach
29	chr5:115758800-115768400	Weak transcription	Primary B cells from cord blood	blood
30	chr5:115759000-115763800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr5:115759000-115773600	Weak transcription	Fetal Kidney	kidney

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