Variant report

Variant	rs1422458
Chromosome Location	chr5:128193116-128193117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1035407	0.81[EUR][1000 genomes]
rs1118881	0.81[EUR][1000 genomes]
rs1345608	0.81[EUR][1000 genomes]
rs1496347	0.80[CHB][hapmap]
rs1496348	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1833549	0.80[CHB][hapmap]
rs2012809	0.81[EUR][1000 genomes]
rs2079100	0.86[MEX][hapmap]
rs2106977	0.81[EUR][1000 genomes]
rs2545018	0.81[MEX][hapmap]
rs2577469	0.81[MEX][hapmap]
rs7700634	0.81[EUR][1000 genomes]
rs7702784	0.80[CHB][hapmap]
rs7713910	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9327495	0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs976784	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599699	chr5:128172808-128259451	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1422458	SLC27A6	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128191000-128194200	Enhancers	Fetal Heart	heart
2	chr5:128192800-128193400	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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