Variant report

Variant	rs7700634
Chromosome Location	chr5:128212638-128212639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10058979	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058982	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1035407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10520015	0.98[ASN][1000 genomes]
rs1118881	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1345608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421887	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1422458	0.81[EUR][1000 genomes]
rs1496348	0.84[EUR][1000 genomes]
rs1988891	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2012809	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2079100	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2106977	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2259002	1.00[JPT][hapmap]
rs2310809	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2522379	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2522380	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2522382	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2522384	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2522386	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2545018	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2545019	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2545020	0.82[CHB][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2545021	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2545023	0.83[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2577464	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2577466	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2577467	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2577469	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34217034	0.98[ASN][1000 genomes]
rs55721000	0.98[ASN][1000 genomes]
rs55729238	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs55745082	0.98[ASN][1000 genomes]
rs55936379	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs56105026	0.94[ASN][1000 genomes]
rs56285759	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6897985	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72795284	0.98[ASN][1000 genomes]
rs72795288	0.98[ASN][1000 genomes]
rs72795289	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72795290	0.98[ASN][1000 genomes]
rs72795292	0.98[ASN][1000 genomes]
rs72795293	0.98[ASN][1000 genomes]
rs72795295	0.98[ASN][1000 genomes]
rs72795296	0.98[ASN][1000 genomes]
rs72795297	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72795300	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72795301	0.98[ASN][1000 genomes]
rs72795302	0.98[ASN][1000 genomes]
rs72797158	0.98[ASN][1000 genomes]
rs72797159	0.98[ASN][1000 genomes]
rs72797161	0.98[ASN][1000 genomes]
rs72797166	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72797172	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72797173	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72797175	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72797176	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72797178	0.98[ASN][1000 genomes]
rs72797183	0.96[ASN][1000 genomes]
rs72797186	0.98[ASN][1000 genomes]
rs7701236	0.98[ASN][1000 genomes]
rs7714784	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7719508	0.98[ASN][1000 genomes]
rs876600	0.86[JPT][hapmap]
rs9327495	0.82[EUR][1000 genomes]
rs976784	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599699	chr5:128172808-128259451	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv462443	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv599700	chr5:128172808-128298437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882837	chr5:128200502-128287228	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv882838	chr5:128203439-128287228	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882839	chr5:128205828-128390167	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv882840	chr5:128205828-128428962	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7700634	SLC27A6	cis	Heart Left Ventricle	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128211800-128213400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:128211800-128213400	Enhancers	Fetal Heart	heart
3	chr5:128211800-128213800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:128212200-128213000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr5:128212200-128213400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:128212200-128213600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:128212400-128212800	Enhancers	H9 Cell Line	embryonic stem cell
8	chr5:128212400-128213000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:128212400-128213200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr5:128212400-128213600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:128212400-128213600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:128212400-128213800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:128212600-128213000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:128212600-128213200	Enhancers	HUES64 Cell Line	embryonic stem cell

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