Variant report

Variant	rs7714784
Chromosome Location	chr5:128155249-128155250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10058979	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10058982	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1035407	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10520015	0.89[ASN][1000 genomes]
rs1118881	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1345608	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1421887	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1422443	0.80[EUR][1000 genomes]
rs1603409	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1988891	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2012809	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2079100	0.86[ASN][1000 genomes]
rs2106977	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2310809	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2522379	0.89[ASN][1000 genomes]
rs2522380	0.89[ASN][1000 genomes]
rs2522382	0.89[ASN][1000 genomes]
rs2522384	0.89[ASN][1000 genomes]
rs2522386	0.89[ASN][1000 genomes]
rs2545018	0.89[ASN][1000 genomes]
rs2545019	0.89[ASN][1000 genomes]
rs2545020	0.89[ASN][1000 genomes]
rs2545021	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2545023	0.90[AFR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2577464	0.89[ASN][1000 genomes]
rs2577466	0.89[ASN][1000 genomes]
rs2577467	0.89[ASN][1000 genomes]
rs2577469	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs34217034	0.89[ASN][1000 genomes]
rs55721000	0.89[ASN][1000 genomes]
rs55729238	0.89[ASN][1000 genomes]
rs55745082	0.89[ASN][1000 genomes]
rs55936379	0.89[ASN][1000 genomes]
rs56105026	0.86[ASN][1000 genomes]
rs56285759	0.86[ASN][1000 genomes]
rs6897985	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs72795284	0.89[ASN][1000 genomes]
rs72795288	0.89[ASN][1000 genomes]
rs72795289	0.89[ASN][1000 genomes]
rs72795290	0.89[ASN][1000 genomes]
rs72795292	0.89[ASN][1000 genomes]
rs72795293	0.89[ASN][1000 genomes]
rs72795295	0.89[ASN][1000 genomes]
rs72795296	0.89[ASN][1000 genomes]
rs72795297	0.89[ASN][1000 genomes]
rs72795300	0.89[ASN][1000 genomes]
rs72795301	0.89[ASN][1000 genomes]
rs72795302	0.89[ASN][1000 genomes]
rs72797158	0.89[ASN][1000 genomes]
rs72797159	0.89[ASN][1000 genomes]
rs72797161	0.89[ASN][1000 genomes]
rs72797166	0.89[ASN][1000 genomes]
rs72797172	0.88[ASN][1000 genomes]
rs72797173	0.89[ASN][1000 genomes]
rs72797175	0.89[ASN][1000 genomes]
rs72797176	0.89[ASN][1000 genomes]
rs72797178	0.89[ASN][1000 genomes]
rs72797183	0.88[ASN][1000 genomes]
rs72797186	0.89[ASN][1000 genomes]
rs7700634	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7701236	0.89[ASN][1000 genomes]
rs7719508	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3392548	chr5:128139102-128159002	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7714784	SLC27A6	cis	Heart Left Ventricle	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128151200-128157400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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