Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10054780	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1035407	0.85[JPT][hapmap]
rs1422443	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs189687	0.80[ASN][1000 genomes]
rs2012809	0.85[JPT][hapmap]
rs2259002	0.86[JPT][hapmap]
rs2310809	0.82[ASN][1000 genomes]
rs247095	0.80[ASN][1000 genomes]
rs247097	0.80[ASN][1000 genomes]
rs247099	0.80[ASN][1000 genomes]
rs247100	0.80[ASN][1000 genomes]
rs2522382	0.86[JPT][hapmap]
rs2522384	0.86[JPT][hapmap]
rs2545018	0.86[JPT][hapmap]
rs2545019	0.86[JPT][hapmap]
rs2545023	0.86[JPT][hapmap]
rs2577469	0.86[JPT][hapmap]
rs4835959	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4836402	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7714784	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023405	chr5:127955360-128190069	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3392548	chr5:128139102-128159002	Enhancers Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:128143600-128151000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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