Variant report

Variant	rs1422702
Chromosome Location	chr5:74510993-74510994
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:74505529..74508894-chr5:74510527..74513977,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10067900	0.82[CEU][hapmap]
rs1114161	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12173218	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1477931	0.81[ASN][1000 genomes]
rs16872436	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17738746	0.80[EUR][1000 genomes]
rs2335107	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3804231	0.85[CEU][hapmap]
rs4703658	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4704171	0.81[EUR][1000 genomes]
rs4704178	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4704193	0.80[EUR][1000 genomes]
rs4704195	0.87[AMR][1000 genomes]
rs55810502	0.81[ASN][1000 genomes]
rs59628276	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60445650	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61010914	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6870235	0.80[EUR][1000 genomes]
rs6872586	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6890143	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6890320	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73763033	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7448834	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9293652	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2758000	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759350	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv882190	chr5:74463185-74554826	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv882191	chr5:74478078-74554826	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74500600-74531400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:74508600-74511200	Enhancers	Fetal Intestine Large	intestine
3	chr5:74509800-74511200	Enhancers	Fetal Intestine Small	intestine
4	chr5:74510200-74511400	Enhancers	Duodenum Mucosa	Duodenum
5	chr5:74510600-74511000	Enhancers	Stomach Mucosa	stomach
6	chr5:74510600-74511200	Enhancers	HepG2	liver

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