Variant report

Variant	rs2335107
Chromosome Location	chr5:74451693-74451694
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1114161	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs12173218	0.80[EUR][1000 genomes]
rs1422702	1.00[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1477931	0.80[EUR][1000 genomes]
rs16872436	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17738746	0.85[EUR][1000 genomes]
rs4298239	0.83[ASN][1000 genomes]
rs4703658	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4704171	0.87[EUR][1000 genomes]
rs4704178	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57441318	0.83[ASN][1000 genomes]
rs59628276	0.80[EUR][1000 genomes]
rs60445650	0.88[EUR][1000 genomes]
rs61010914	0.87[EUR][1000 genomes]
rs6872586	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6890143	0.80[EUR][1000 genomes]
rs6890320	0.80[EUR][1000 genomes]
rs6893216	0.80[EUR][1000 genomes]
rs73127363	0.82[ASN][1000 genomes]
rs73763033	0.80[EUR][1000 genomes]
rs7448834	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2758000	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759350	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74444600-74454800	Weak transcription	Primary T cells from cord blood	blood
2	chr5:74449400-74456400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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