Variant report

Variant	rs4298239
Chromosome Location	chr5:74382081-74382082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1114161	0.85[CEU][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap]
rs1422702	0.85[CEU][hapmap];0.85[JPT][hapmap]
rs16872436	0.83[CEU][hapmap]
rs17671496	0.84[GIH][hapmap]
rs2335107	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4703658	0.85[CEU][hapmap];0.87[GIH][hapmap]
rs4704171	0.86[EUR][1000 genomes]
rs4704178	0.82[EUR][1000 genomes]
rs57441318	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61010914	0.86[EUR][1000 genomes]
rs6872586	0.92[CEU][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap]
rs73127363	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74377200-74384600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr5:74377800-74384000	Weak transcription	Thymus	Thymus
3	chr5:74378200-74382400	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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