Variant report

Variant	rs142327632
Chromosome Location	chr7:40135856-40135857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:40135569..40137778-chr7:40140510..40143010,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf10-5	chr7:40135564-40136731	NONHSAT120243

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015322	chr7:40006195-40141195	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv2761319	chr7:40006195-40142139	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv606708	chr7:40021044-40157040	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv429748	chr7:40054760-40140660	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv2756801	chr7:40060180-40269583	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv2759525	chr7:40060180-40269583	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv887979	chr7:40067021-40193535	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
8	nsv887980	chr7:40067021-40203356	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	nsv887981	chr7:40075461-40203356	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv971193	chr7:40075881-40197955	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	esv34547	chr7:40077032-40230965	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
12	nsv824080	chr7:40077089-40198644	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
13	nsv464437	chr7:40094641-40197168	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
14	nsv606709	chr7:40094641-40197168	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
15	nsv1032278	chr7:40097371-40396300	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
16	nsv887982	chr7:40098787-40193535	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
17	esv3324215	chr7:40135127-40141025	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:40116400-40136000	Weak transcription	Fetal Brain Male	brain
2	chr7:40117600-40138000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:40118600-40136600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr7:40122800-40137600	Strong transcription	Dnd41	blood
5	chr7:40124000-40137600	Strong transcription	Duodenum Mucosa	Duodenum
6	chr7:40124000-40137800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:40124000-40138400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr7:40124400-40136000	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr7:40124400-40136400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:40124400-40137800	Strong transcription	Primary T cells from cord blood	blood
11	chr7:40125000-40137600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:40125800-40136000	Strong transcription	Fetal Thymus	thymus
13	chr7:40125800-40136200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr7:40125800-40137600	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr7:40125800-40137800	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr7:40126000-40142400	Weak transcription	Fetal Heart	heart
17	chr7:40126600-40136400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:40126600-40137200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:40127400-40136600	Strong transcription	Primary B cells from cord blood	blood
20	chr7:40127400-40137600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:40127600-40136000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:40127600-40136400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr7:40127800-40136600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:40130800-40137000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:40131000-40136000	Strong transcription	Osteobl	bone
26	chr7:40131000-40137800	Strong transcription	HSMM	muscle
27	chr7:40131200-40136200	Strong transcription	K562	blood
28	chr7:40131200-40136400	Strong transcription	A549	lung
29	chr7:40131200-40136600	Strong transcription	Placenta	Placenta
30	chr7:40131200-40137600	Strong transcription	Hela-S3	cervix
31	chr7:40131400-40136200	Strong transcription	Fetal Lung	lung
32	chr7:40131400-40137800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:40131400-40141400	Weak transcription	Stomach Mucosa	stomach
34	chr7:40131600-40136200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr7:40131600-40136200	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr7:40131600-40137600	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr7:40131800-40137400	Strong transcription	Primary hematopoietic stem cells	blood
38	chr7:40132400-40136000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr7:40132400-40136000	Strong transcription	GM12878-XiMat	blood
40	chr7:40132400-40136000	Strong transcription	HUVEC	blood vessel
41	chr7:40132400-40137600	Strong transcription	NH-A	brain
42	chr7:40133400-40137000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr7:40133600-40136200	Strong transcription	Placenta Amnion	Placenta Amnion
44	chr7:40134200-40137600	Weak transcription	Colon Smooth Muscle	Colon
45	chr7:40134400-40136600	Weak transcription	Small Intestine	intestine
46	chr7:40134600-40136200	Enhancers	HepG2	liver
47	chr7:40134600-40136400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr7:40134600-40136400	Weak transcription	Spleen	Spleen
49	chr7:40134600-40136800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr7:40134600-40137000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links