Variant report

Variant	rs1423659
Chromosome Location	chr5:35938412-35938413
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10472267	1.00[CEU][hapmap]
rs10941268	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1374016	1.00[CEU][hapmap]
rs16902614	0.96[ASN][1000 genomes]
rs17311549	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2287899	0.87[ASN][1000 genomes]
rs6890660	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs962029	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35938200-35938600	Active TSS	Fetal Kidney	kidney
2	chr5:35938200-35939000	Active TSS	Brain Anterior Caudate	brain
3	chr5:35938200-35939200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:35938400-35938800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:35938400-35939000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr5:35938400-35939400	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links