Variant report

Variant	rs16902614
Chromosome Location	chr5:35926216-35926217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:35617438..35618836-chr5:35926016..35926807,5	MCF-7	breast:
2	chr5:35651008..35652005-chr5:35925817..35927200,7	MCF-7	breast:
3	chr5:35777444..35778422-chr5:35926189..35927128,7	MCF-7	breast:
4	chr5:35650884..35652138-chr5:35924738..35927702,19	MCF-7	breast:
5	chr5:35089142..35090788-chr5:35926139..35927311,7	K562	blood:

Variant related genes	Relation type
ENSG00000152582	Chromatin interaction
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10472267	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11567715	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11567719	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs11567723	1.00[EUR][1000 genomes]
rs1374016	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1423659	0.96[ASN][1000 genomes]
rs16874301	0.86[CHB][hapmap]
rs16902616	0.82[YRI][hapmap];0.89[AFR][1000 genomes]
rs16902617	0.89[AFR][1000 genomes]
rs16902677	0.86[CHB][hapmap]
rs2172750	1.00[EUR][1000 genomes]
rs2229232	0.84[JPT][hapmap];1.00[EUR][1000 genomes]
rs2287899	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3777089	1.00[JPT][hapmap];1.00[EUR][1000 genomes]
rs968833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv4794	chr5:35906690-35934205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35924000-35926800	Enhancers	Fetal Thymus	thymus
2	chr5:35924200-35931000	Weak transcription	Gastric	stomach
3	chr5:35924600-35926600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:35925200-35926600	Enhancers	Primary B cells from cord blood	blood
5	chr5:35925400-35926400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:35925400-35926400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:35925400-35926400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:35925400-35926400	Weak transcription	Brain Angular Gyrus	brain
9	chr5:35925400-35926400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr5:35925400-35926400	Weak transcription	Brain Substantia Nigra	brain
11	chr5:35925400-35926400	Weak transcription	Ovary	ovary
12	chr5:35925400-35926400	Weak transcription	Right Atrium	heart
13	chr5:35925400-35926400	Weak transcription	HSMM	muscle
14	chr5:35925400-35926400	Weak transcription	NHLF	lung
15	chr5:35925400-35926800	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr5:35925600-35926400	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr5:35925600-35926400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:35925600-35926400	Weak transcription	Brain Anterior Caudate	brain
19	chr5:35925600-35926400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr5:35925600-35926600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr5:35925600-35926600	Enhancers	Primary T cells from cord blood	blood
22	chr5:35925600-35926600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr5:35925600-35926600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:35925600-35926800	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr5:35925600-35926800	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr5:35925600-35926800	Weak transcription	HMEC	breast
27	chr5:35925600-35927200	Enhancers	Dnd41	blood
28	chr5:35925800-35926400	Enhancers	Primary T cells fromperipheralblood	blood
29	chr5:35925800-35926600	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr5:35926000-35926400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr5:35926000-35926400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr5:35926000-35926600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr5:35926000-35926800	Enhancers	Placenta Amnion	Placenta Amnion
34	chr5:35926200-35926400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:35926200-35926400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
36	chr5:35926200-35926400	Bivalent Enhancer	A549	lung
37	chr5:35926200-35926400	Active TSS	NHDF-Ad	bronchial
38	chr5:35926200-35926400	Active TSS	Osteobl	bone
39	chr5:35926200-35926600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
40	chr5:35926200-35926600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr5:35926200-35926600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr5:35926200-35926600	Flanking Active TSS	Placenta	Placenta
43	chr5:35926200-35926800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
44	chr5:35926200-35926800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr5:35926200-35926800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr5:35926200-35926800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr5:35926200-35926800	Active TSS	Brain Hippocampus Middle	brain
48	chr5:35926200-35927000	Active TSS	Brain Inferior Temporal Lobe	brain

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