Variant report

Variant	rs16902677
Chromosome Location	chr5:35987619-35987620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10059794	0.83[ASN][1000 genomes]
rs10472267	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs11567719	0.85[JPT][hapmap]
rs1374016	0.82[CHB][hapmap]
rs16874301	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs16900001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16902614	0.86[CHB][hapmap]
rs16902660	0.82[JPT][hapmap];1.00[AFR][1000 genomes]
rs16902661	0.82[JPT][hapmap]
rs16902693	1.00[AFR][1000 genomes]
rs3777089	0.86[JPT][hapmap]
rs41516445	1.00[AMR][1000 genomes]
rs4869444	0.82[JPT][hapmap];1.00[AFR][1000 genomes]
rs4869454	1.00[AFR][1000 genomes]
rs4869569	1.00[AMR][1000 genomes]
rs6862232	0.83[ASN][1000 genomes]
rs7447304	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs889317	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3347042	chr5:35965538-36049066	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35983000-35989400	Weak transcription	Liver	Liver
2	chr5:35983200-35990600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:35986400-35990600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:35987200-35989800	Active TSS	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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