Variant report

Variant	rs41516445
Chromosome Location	chr5:35964819-35964820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1374015	0.91[ASN][1000 genomes]
rs16900001	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs16902660	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16902661	1.00[JPT][hapmap]
rs16902677	0.82[JPT][hapmap];1.00[AMR][1000 genomes]
rs16902693	1.00[MEX][hapmap]
rs2229232	0.82[JPT][hapmap]
rs4869444	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4869569	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35959000-35969200	Weak transcription	Psoas Muscle	Psoas
2	chr5:35960400-35966400	Strong transcription	Fetal Intestine Large	intestine
3	chr5:35963600-35966200	Weak transcription	Thymus	Thymus
4	chr5:35963600-35968200	Strong transcription	Liver	Liver
5	chr5:35963800-35965600	Strong transcription	Fetal Intestine Small	intestine
6	chr5:35964000-35969000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr5:35964000-35969000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr5:35964600-35965200	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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