Variant report

Variant	rs6862232
Chromosome Location	chr5:36030269-36030270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10059794	1.00[ASN][1000 genomes]
rs16874301	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16902677	0.82[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs16902693	1.00[TSI][hapmap]
rs73078030	0.87[ASN][1000 genomes]
rs7447304	0.96[ASN][1000 genomes]
rs7709584	1.00[EUR][1000 genomes]
rs889317	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3347042	chr5:35965538-36049066	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36028400-36033000	Weak transcription	Fetal Lung	lung
2	chr5:36029400-36030800	Enhancers	Brain Anterior Caudate	brain
3	chr5:36029400-36031000	Enhancers	Brain Hippocampus Middle	brain
4	chr5:36029800-36030600	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr5:36029800-36030800	Enhancers	Brain Substantia Nigra	brain
6	chr5:36030000-36030400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:36030000-36030400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:36030000-36030400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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