Variant report

Variant	rs73078030
Chromosome Location	chr5:36034106-36034107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10059794	0.87[ASN][1000 genomes]
rs16874301	0.83[ASN][1000 genomes]
rs16902693	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6862232	0.87[ASN][1000 genomes]
rs7447304	0.83[ASN][1000 genomes]
rs889317	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3347042	chr5:35965538-36049066	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36030400-36034600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr5:36031200-36047800	Weak transcription	Fetal Thymus	thymus
3	chr5:36033000-36034400	Enhancers	Fetal Intestine Large	intestine
4	chr5:36033000-36035000	Enhancers	Fetal Lung	lung
5	chr5:36033000-36036800	Enhancers	Fetal Intestine Small	intestine
6	chr5:36033600-36034200	Active TSS	Fetal Brain Male	brain
7	chr5:36033600-36035800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:36033600-36040600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:36034000-36040600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links