Variant report

Variant	rs1423874
Chromosome Location	chr16:76176700-76176701
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:76170732..76173663-chr16:76174703..76177407,2	MCF-7	breast:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10163251	0.94[EUR][1000 genomes]
rs11149876	0.94[EUR][1000 genomes]
rs11149877	0.94[EUR][1000 genomes]
rs11866633	0.88[EUR][1000 genomes]
rs11866636	0.94[EUR][1000 genomes]
rs13331296	0.94[EUR][1000 genomes]
rs13331602	0.94[EUR][1000 genomes]
rs1423871	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1423872	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1423873	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16943919	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16943934	0.94[EUR][1000 genomes]
rs16943939	0.94[EUR][1000 genomes]
rs16943941	0.94[EUR][1000 genomes]
rs16943946	0.94[EUR][1000 genomes]
rs16943950	1.00[EUR][1000 genomes]
rs16943958	0.94[EUR][1000 genomes]
rs16943959	0.94[EUR][1000 genomes]
rs16943961	0.94[EUR][1000 genomes]
rs16943968	0.94[EUR][1000 genomes]
rs16943982	0.94[EUR][1000 genomes]
rs16943984	0.94[EUR][1000 genomes]
rs16943985	0.94[EUR][1000 genomes]
rs16943987	0.94[EUR][1000 genomes]
rs16943993	0.94[EUR][1000 genomes]
rs16944009	0.94[EUR][1000 genomes]
rs16944028	0.94[EUR][1000 genomes]
rs1862734	0.88[EUR][1000 genomes]
rs2068766	0.94[EUR][1000 genomes]
rs2068767	0.94[EUR][1000 genomes]
rs2866618	0.94[EUR][1000 genomes]
rs35502579	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3851746	0.94[EUR][1000 genomes]
rs3974505	0.94[EUR][1000 genomes]
rs41342148	0.94[EUR][1000 genomes]
rs41362653	0.94[EUR][1000 genomes]
rs4402597	0.94[EUR][1000 genomes]
rs4442846	0.94[EUR][1000 genomes]
rs55635438	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55881740	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55994904	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs56953914	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57109711	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57998481	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58760709	0.94[EUR][1000 genomes]
rs59928162	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60908538	0.87[AFR][1000 genomes]
rs61104953	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61462397	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61656234	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73615421	0.94[EUR][1000 genomes]
rs73615422	0.94[EUR][1000 genomes]
rs73615426	0.94[EUR][1000 genomes]
rs74024925	0.94[EUR][1000 genomes]
rs74024932	0.94[EUR][1000 genomes]
rs74025668	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74025669	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs74025670	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs74025672	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74025673	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74025674	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74025675	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74025676	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74025677	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74025678	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74025679	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74025680	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7500400	0.94[EUR][1000 genomes]
rs8061252	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9806802	0.94[EUR][1000 genomes]
rs9806966	0.94[EUR][1000 genomes]
rs9806969	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1064607	chr16:75787129-76449101	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1065794	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv542961	chr16:75792288-76434118	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1059162	chr16:75929348-76730816	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv572995	chr16:75935025-76708417	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv572996	chr16:75935025-76735249	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv817220	chr16:75939705-76735383	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1056021	chr16:75955522-76729765	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv542962	chr16:75955522-76729765	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	nsv906935	chr16:76031737-76453110	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv906936	chr16:76031737-76768178	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
13	nsv833284	chr16:76057741-76205989	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv817549	chr16:76067068-76582099	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv833285	chr16:76136345-76345398	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv573000	chr16:76140126-76188325	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv1055567	chr16:76151892-76200446	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv1065644	chr16:76166579-76475634	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv524334	chr16:76169731-76197034	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv573001	chr16:76169731-76197034	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv960374	chr16:76169884-76180870	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	nsv573002	chr16:76174188-76280843	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv906938	chr16:76174188-76293092	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
24	esv3336512	chr16:76175851-76179649	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:76158200-76181400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:76176600-76176800	Enhancers	Brain Angular Gyrus	brain

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