Variant report

Variant	rs142421405
Chromosome Location	chr7:150104145-150104146
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150063876..150080670-chr7:150093696..150109118,65	MCF-7	breast:
2	chr7:149535432..149538355-chr7:150102358..150106003,3	MCF-7	breast:
3	chr7:150074289..150079503-chr7:150100156..150104408,10	MCF-7	breast:
4	chr7:150063752..150069023-chr7:150095376..150104764,21	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RARRES2-5	chr7:150102459-150104574	NONHSAT124131

Variant related genes	Relation type
ENSG00000196456	Chromatin interaction
ENSG00000106479	Chromatin interaction
ENSG00000240449	Chromatin interaction
ENSG00000214022	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv889453	chr7:150009838-150104410	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv889454	chr7:150009838-150115183	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv889455	chr7:150013393-150104410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv889456	chr7:150013393-150115183	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv889457	chr7:150020295-150104410	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
11	nsv889458	chr7:150020295-150115183	Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
12	nsv521407	chr7:150020295-150118590	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
13	nsv465211	chr7:150035526-150104410	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
14	nsv608991	chr7:150035526-150104410	Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
15	nsv608992	chr7:150045910-150115183	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
16	esv1819714	chr7:150055837-150154944	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
17	nsv889462	chr7:150060163-150108536	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
18	esv3361147	chr7:150103844-150106392	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150101400-150104400	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr7:150102000-150104600	Enhancers	Fetal Heart	heart
3	chr7:150102800-150104200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:150102800-150104400	Flanking Active TSS	Liver	Liver
5	chr7:150102800-150104400	Flanking Active TSS	Fetal Intestine Large	intestine
6	chr7:150102800-150104400	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr7:150102800-150104600	Flanking Active TSS	Primary B cells from peripheral blood	blood
8	chr7:150102800-150104600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
9	chr7:150102800-150104600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr7:150102800-150104600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr7:150102800-150104600	Flanking Active TSS	GM12878-XiMat	blood
12	chr7:150103000-150104400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
13	chr7:150103000-150104400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:150103000-150104400	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr7:150103000-150104400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr7:150103000-150104400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:150103000-150104400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:150103000-150104400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr7:150103000-150104400	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr7:150103000-150104400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
21	chr7:150103000-150104400	Flanking Active TSS	Dnd41	blood
22	chr7:150103000-150104400	Flanking Active TSS	K562	blood
23	chr7:150103000-150104600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr7:150103000-150104600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
25	chr7:150103000-150104600	Flanking Active TSS	Fetal Thymus	thymus
26	chr7:150103000-150104600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
27	chr7:150103000-150104600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
28	chr7:150103000-150104600	Flanking Active TSS	HepG2	liver
29	chr7:150103200-150104200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:150103200-150104200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:150103200-150104200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr7:150103200-150104400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr7:150103200-150104400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr7:150103200-150104400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
35	chr7:150103200-150104400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr7:150103200-150104400	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr7:150103200-150104400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr7:150103200-150104400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
39	chr7:150103200-150104400	Flanking Active TSS	Thymus	Thymus
40	chr7:150103200-150104400	Flanking Active TSS	A549	lung
41	chr7:150103200-150104400	Flanking Active TSS	NHDF-Ad	bronchial
42	chr7:150103200-150104600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr7:150103200-150104600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr7:150103200-150104600	Flanking Active TSS	Duodenum Mucosa	Duodenum
45	chr7:150103200-150104600	Enhancers	Placenta	Placenta
46	chr7:150103200-150104600	Flanking Active TSS	Rectal Smooth Muscle	rectum
47	chr7:150103200-150107400	Weak transcription	Aorta	Aorta
48	chr7:150103200-150108200	Weak transcription	HMEC	breast
49	chr7:150103400-150104200	Enhancers	Spleen	Spleen
50	chr7:150103400-150104400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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