Variant report

Variant	esv3361147
Chromosome Location	chr7:150103844-150106392
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:149535432..149538355-chr7:150102358..150106003,3	MCF-7	breast:
2	chr7:150100951..150103738-chr7:150105475..150107224,2	MCF-7	breast:
3	chr7:150018857..150021301-chr7:150100532..150103886,6	K562	blood:
4	chr7:150018241..150020032-chr7:150105817..150108245,2	K562	blood:
5	chr7:150063876..150080670-chr7:150093696..150109118,65	MCF-7	breast:
6	chr7:150063752..150069023-chr7:150095376..150104764,21	MCF-7	breast:
7	chr7:150074289..150079503-chr7:150100156..150104408,10	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RARRES2-5	chr7:150102459-150104574	NONHSAT124131

No data

Variant related genes	Relation type
ENSG00000106526	chromatin interactions
ENSG00000240449	chromatin interactions
ENSG00000214022	chromatin interactions
ENSG00000106479	chromatin interactions
ENSG00000196456	chromatin interactions
ENSG00000127399	chromatin interactions

Extended variants
information (count: 92 )
Associated
traits (count: 85 )

Variant overlapped rSNPs/rCNVs (count:92 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs575650615	chr7:150103848-150103849	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
2	rs544380199	chr7:150103859-150103860	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
3	rs112501561	chr7:150103860-150103861	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
4	rs76539755	chr7:150103861-150103862	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	6 gene(s)	Overlapped CNVs	n/a
5	rs540505459	chr7:150103904-150103905	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
6	rs560388089	chr7:150103906-150103907	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
7	rs572662433	chr7:150103915-150103916	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
8	rs552312724	chr7:150103964-150103965	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
9	rs137889323	chr7:150103969-150103970	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
10	rs185685573	chr7:150104000-150104001	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
11	rs80002207	chr7:150104042-150104043	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
12	rs563147102	chr7:150104059-150104060	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
13	rs142421405	chr7:150104145-150104146	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
14	rs77900244	chr7:150104233-150104234	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
15	rs372799632	chr7:150104254-150104255	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
16	rs189482290	chr7:150104279-150104280	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
17	rs180703033	chr7:150104306-150104307	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
18	rs375991869	chr7:150104328-150104329	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
19	rs2293282	chr7:150104410-150104411	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
20	rs539750029	chr7:150104429-150104430	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
21	rs560350469	chr7:150104446-150104447	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
22	rs556276296	chr7:150104462-150104463	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
23	rs185381510	chr7:150104465-150104466	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
24	rs561484559	chr7:150104481-150104482	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
25	rs10278382	chr7:150104506-150104507	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
26	rs150120089	chr7:150104507-150104508	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
27	rs13243612	chr7:150104515-150104516	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
28	rs369472214	chr7:150104568-150104569	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	Overlapped CNVs	n/a
29	rs540201900	chr7:150104577-150104578	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
30	rs560123640	chr7:150104604-150104605	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
31	rs188570460	chr7:150104624-150104625	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
32	rs546227925	chr7:150104650-150104651	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
33	rs563089848	chr7:150104656-150104657	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
34	rs13244033	chr7:150104671-150104672	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
35	rs537866052	chr7:150104681-150104682	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
36	rs13244126	chr7:150104708-150104709	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
37	rs548244548	chr7:150104726-150104727	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
38	rs561735839	chr7:150104727-150104728	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
39	rs556145863	chr7:150104811-150104812	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
40	rs111966889	chr7:150104818-150104819	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
41	rs527395131	chr7:150104896-150104897	Weak transcription Genic enhancers Enhancers Strong transcription	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
42	rs547374314	chr7:150105037-150105038	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
43	rs570465093	chr7:150105105-150105106	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
44	rs571214595	chr7:150105196-150105197	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
45	rs533261436	chr7:150105248-150105249	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
46	rs548993067	chr7:150105269-150105270	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
47	rs549846333	chr7:150105318-150105319	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
48	rs569816393	chr7:150105334-150105335	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
49	rs535267508	chr7:150105369-150105370	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a
50	rs555554423	chr7:150105382-150105383	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	4 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:85)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Wilms tumour	21544195	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Multiple myeloma	17550852	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neurodevelopmental disorder	22521361	CNVD
abortions and stillbirths	19751515	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Acute myeloid leukemia	20729466	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Burkitt''s lymphoma	19759907	CNVD
lymphocytic leukemia	21291569	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	16573809	CNVD
Medulloblastoma	16783165	CNVD
abnormal development	18461090	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Papillary thyroid carcinoma	21436994	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Hodgkin''s lymphoma	18179710	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Breast cancer	17603634	CNVD
Urothelial carcinoma	18382360	CNVD
Myelodysplastic syndrome	17634407	CNVD
Multiple myeloma	16461302	CNVD
Neuroblastoma	18923191	CNVD
Schizophrenia	17646849	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	16864856	CNVD
Autism	20808228	CNVD
Breast cancer	21509527	CNVD
Ovarian cancer	21720365	CNVD
Heart disease	21282601	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Glioblastoma multiforme	17002787	CNVD
Lobular carcinoma	20920651	CNVD
Long-qt syndrome	20920651	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Liver carcinoma	19366792	CNVD
Long-qt syndrome	17576883	CNVD
Bradycardia syndrome	17576883	CNVD
Sudden cardiac death	19188705	CNVD
renal disease	17924346	CNVD
Ovarian cancer	21781307	CNVD
Pancreatic cancer	17952125	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD

Chromatin state (count:335 , 50 per page) page: 1 2 3 4 5 6 7

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150101200-150104000	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr7:150101400-150104400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr7:150101600-150104000	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr7:150102000-150104600	Enhancers	Fetal Heart	heart
5	chr7:150102800-150104000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:150102800-150104000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
7	chr7:150102800-150104000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr7:150102800-150104200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:150102800-150104400	Flanking Active TSS	Liver	Liver
10	chr7:150102800-150104400	Flanking Active TSS	Fetal Intestine Large	intestine
11	chr7:150102800-150104400	Flanking Active TSS	Stomach Smooth Muscle	stomach
12	chr7:150102800-150104600	Flanking Active TSS	Primary B cells from peripheral blood	blood
13	chr7:150102800-150104600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
14	chr7:150102800-150104600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr7:150102800-150104600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr7:150102800-150104600	Flanking Active TSS	GM12878-XiMat	blood
17	chr7:150103000-150104000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:150103000-150104000	Flanking Active TSS	Brain Cingulate Gyrus	brain
19	chr7:150103000-150104000	Flanking Active TSS	Fetal Intestine Small	intestine
20	chr7:150103000-150104000	Flanking Active TSS	Pancreas	Pancrea
21	chr7:150103000-150104000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr7:150103000-150104400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
23	chr7:150103000-150104400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:150103000-150104400	Flanking Active TSS	Primary T cells from cord blood	blood
25	chr7:150103000-150104400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
26	chr7:150103000-150104400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:150103000-150104400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:150103000-150104400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:150103000-150104400	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr7:150103000-150104400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
31	chr7:150103000-150104400	Flanking Active TSS	Dnd41	blood
32	chr7:150103000-150104400	Flanking Active TSS	K562	blood
33	chr7:150103000-150104600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr7:150103000-150104600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr7:150103000-150104600	Flanking Active TSS	Fetal Thymus	thymus
36	chr7:150103000-150104600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr7:150103000-150104600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
38	chr7:150103000-150104600	Flanking Active TSS	HepG2	liver
39	chr7:150103200-150104000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr7:150103200-150104000	Flanking Active TSS	Colonic Mucosa	Colon
41	chr7:150103200-150104000	Enhancers	Lung	lung
42	chr7:150103200-150104200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr7:150103200-150104200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:150103200-150104200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr7:150103200-150104400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr7:150103200-150104400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr7:150103200-150104400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr7:150103200-150104400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr7:150103200-150104400	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr7:150103200-150104400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood

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