Variant report

Variant	rs546227925
Chromosome Location	chr7:150104650-150104651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150063876..150080670-chr7:150093696..150109118,65	MCF-7	breast:
2	chr7:149535432..149538355-chr7:150102358..150106003,3	MCF-7	breast:
3	chr7:150063752..150069023-chr7:150095376..150104764,21	MCF-7	breast:

Variant related genes	Relation type
ENSG00000240449	Chromatin interaction
ENSG00000196456	Chromatin interaction
ENSG00000106479	Chromatin interaction
ENSG00000214022	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv889454	chr7:150009838-150115183	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv889456	chr7:150013393-150115183	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
7	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
8	nsv889458	chr7:150020295-150115183	Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv521407	chr7:150020295-150118590	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
10	nsv608992	chr7:150045910-150115183	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
11	esv1819714	chr7:150055837-150154944	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
12	nsv889462	chr7:150060163-150108536	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
13	esv3361147	chr7:150103844-150106392	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150103200-150107400	Weak transcription	Aorta	Aorta
2	chr7:150103200-150108200	Weak transcription	HMEC	breast
3	chr7:150103400-150104800	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr7:150103400-150107200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:150103400-150112200	Weak transcription	Ovary	ovary
6	chr7:150103600-150104800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr7:150103600-150105000	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:150103600-150105000	Enhancers	Esophagus	oesophagus
9	chr7:150103600-150105000	Enhancers	Right Ventricle	heart
10	chr7:150103600-150108200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:150103600-150110600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:150103800-150104800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:150103800-150107800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:150103800-150107800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:150103800-150108000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr7:150104000-150104800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:150104000-150104800	Weak transcription	Fetal Brain Female	brain
18	chr7:150104000-150104800	Weak transcription	Lung	lung
19	chr7:150104000-150104800	Enhancers	Pancreas	Pancrea
20	chr7:150104000-150107000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr7:150104000-150107200	Weak transcription	Brain Hippocampus Middle	brain
22	chr7:150104000-150107400	Weak transcription	Brain Substantia Nigra	brain
23	chr7:150104000-150107800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:150104000-150108200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:150104000-150108200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr7:150104000-150108200	Weak transcription	NHEK	skin
27	chr7:150104000-150108600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:150104000-150111400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr7:150104200-150104800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr7:150104200-150107200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr7:150104400-150104800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr7:150104400-150104800	Weak transcription	Fetal Stomach	stomach
33	chr7:150104400-150104800	Enhancers	Spleen	Spleen
34	chr7:150104400-150105000	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr7:150104400-150105000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr7:150104400-150105600	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr7:150104400-150105600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr7:150104400-150105600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr7:150104400-150105800	Weak transcription	Fetal Muscle Leg	muscle
40	chr7:150104400-150106600	Weak transcription	Brain Anterior Caudate	brain
41	chr7:150104400-150106800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr7:150104400-150106800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr7:150104400-150107200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr7:150104400-150107200	Enhancers	Primary B cells from cord blood	blood
45	chr7:150104400-150107200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr7:150104400-150107200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:150104400-150107200	Weak transcription	Colon Smooth Muscle	Colon
48	chr7:150104400-150107600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr7:150104400-150107600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr7:150104400-150107800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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