Variant report

Variant	rs76539755
Chromosome Location	chr7:150103861-150103862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:150063876..150080670-chr7:150093696..150109118,65	MCF-7	breast:
2	chr7:149535432..149538355-chr7:150102358..150106003,3	MCF-7	breast:
3	chr7:150018857..150021301-chr7:150100532..150103886,6	K562	blood:
4	chr7:150074289..150079503-chr7:150100156..150104408,10	MCF-7	breast:
5	chr7:150063752..150069023-chr7:150095376..150104764,21	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RARRES2-5	chr7:150102459-150104574	NONHSAT124131

No data

Variant related genes	Relation type
ENSG00000214022	Chromatin interaction
ENSG00000196456	Chromatin interaction
ENSG00000106526	Chromatin interaction
ENSG00000127399	Chromatin interaction
ENSG00000240449	Chromatin interaction
ENSG00000106479	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv889453	chr7:150009838-150104410	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv889454	chr7:150009838-150115183	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv889455	chr7:150013393-150104410	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv889456	chr7:150013393-150115183	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
10	nsv889457	chr7:150020295-150104410	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
11	nsv889458	chr7:150020295-150115183	Enhancers Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
12	nsv521407	chr7:150020295-150118590	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
13	nsv465211	chr7:150035526-150104410	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
14	nsv608991	chr7:150035526-150104410	Flanking Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
15	nsv608992	chr7:150045910-150115183	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
16	esv1819714	chr7:150055837-150154944	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
17	nsv889462	chr7:150060163-150108536	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
18	esv3361147	chr7:150103844-150106392	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150101200-150104000	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr7:150101400-150104400	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr7:150101600-150104000	Flanking Active TSS	Primary hematopoietic stem cells	blood
4	chr7:150102000-150104600	Enhancers	Fetal Heart	heart
5	chr7:150102800-150104000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:150102800-150104000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
7	chr7:150102800-150104000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr7:150102800-150104200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:150102800-150104400	Flanking Active TSS	Liver	Liver
10	chr7:150102800-150104400	Flanking Active TSS	Fetal Intestine Large	intestine
11	chr7:150102800-150104400	Flanking Active TSS	Stomach Smooth Muscle	stomach
12	chr7:150102800-150104600	Flanking Active TSS	Primary B cells from peripheral blood	blood
13	chr7:150102800-150104600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
14	chr7:150102800-150104600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr7:150102800-150104600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr7:150102800-150104600	Flanking Active TSS	GM12878-XiMat	blood
17	chr7:150103000-150104000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:150103000-150104000	Flanking Active TSS	Brain Cingulate Gyrus	brain
19	chr7:150103000-150104000	Flanking Active TSS	Fetal Intestine Small	intestine
20	chr7:150103000-150104000	Flanking Active TSS	Pancreas	Pancrea
21	chr7:150103000-150104000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr7:150103000-150104400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
23	chr7:150103000-150104400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr7:150103000-150104400	Flanking Active TSS	Primary T cells from cord blood	blood
25	chr7:150103000-150104400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
26	chr7:150103000-150104400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:150103000-150104400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr7:150103000-150104400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:150103000-150104400	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr7:150103000-150104400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
31	chr7:150103000-150104400	Flanking Active TSS	Dnd41	blood
32	chr7:150103000-150104400	Flanking Active TSS	K562	blood
33	chr7:150103000-150104600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr7:150103000-150104600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
35	chr7:150103000-150104600	Flanking Active TSS	Fetal Thymus	thymus
36	chr7:150103000-150104600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr7:150103000-150104600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
38	chr7:150103000-150104600	Flanking Active TSS	HepG2	liver
39	chr7:150103200-150104000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr7:150103200-150104000	Flanking Active TSS	Colonic Mucosa	Colon
41	chr7:150103200-150104000	Enhancers	Lung	lung
42	chr7:150103200-150104200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr7:150103200-150104200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:150103200-150104200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr7:150103200-150104400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
46	chr7:150103200-150104400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
47	chr7:150103200-150104400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
48	chr7:150103200-150104400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
49	chr7:150103200-150104400	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr7:150103200-150104400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood

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