Variant report

Variant	rs142636061
Chromosome Location	chr13:50509884-50509885
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50509071..50511034-chr13:50570092..50572951,3	K562	blood:
2	chr13:50509813..50511946-chr17:39844014..39846019,2	MCF-7	breast:
3	chr13:50365136..50367359-chr13:50509492..50511604,3	MCF-7	breast:
4	chr13:50507293..50510312-chr13:50568081..50571220,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173812	Chromatin interaction
ENSG00000264864	Chromatin interaction
ENSG00000102753	Chromatin interaction
ENSG00000204977	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1836423	chr13:50509784-50514706	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1836704	chr13:50509784-50514706	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1838605	chr13:50509784-50514706	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv1834429	chr13:50509784-50536186	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50489200-50510000	Weak transcription	Spleen	Spleen
2	chr13:50508800-50510400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr13:50508800-50511400	Active TSS	Right Atrium	heart
4	chr13:50509000-50510000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr13:50509000-50510800	Active TSS	Skeletal Muscle Female	skeletal muscle
6	chr13:50509000-50511400	Active TSS	A549	lung
7	chr13:50509000-50511400	Active TSS	K562	blood
8	chr13:50509000-50511600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:50509000-50511600	Active TSS	HMEC	breast
10	chr13:50509000-50511800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr13:50509200-50510000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr13:50509200-50510200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr13:50509200-50511400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr13:50509400-50510000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr13:50509400-50510000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
16	chr13:50509400-50510000	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr13:50509400-50510000	Flanking Active TSS	Liver	Liver
18	chr13:50509400-50510000	Flanking Active TSS	Brain Anterior Caudate	brain
19	chr13:50509400-50510000	Flanking Active TSS	Brain Germinal Matrix	brain
20	chr13:50509400-50510000	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr13:50509400-50510000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr13:50509400-50510000	Flanking Active TSS	HUVEC	blood vessel
23	chr13:50509400-50510200	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr13:50509400-50511000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr13:50509400-50511200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr13:50509400-50511200	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr13:50509400-50511200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr13:50509400-50511200	Active TSS	Brain Hippocampus Middle	brain
29	chr13:50509400-50511200	Active TSS	Psoas Muscle	Psoas
30	chr13:50509400-50511400	Active TSS	H1 Cell Line	embryonic stem cell
31	chr13:50509400-50511400	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr13:50509400-50511400	Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr13:50509400-50511400	Active TSS	Fetal Intestine Large	intestine
34	chr13:50509400-50511400	Active TSS	HSMMtube	muscle
35	chr13:50509400-50511600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr13:50509400-50511600	Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr13:50509400-50511600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr13:50509400-50511600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr13:50509400-50511600	Active TSS	NHLF	lung
40	chr13:50509600-50510000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr13:50509600-50510000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
42	chr13:50509600-50510000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr13:50509600-50510000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
44	chr13:50509600-50510000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr13:50509600-50510000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
46	chr13:50509600-50510000	Flanking Active TSS	Fetal Brain Male	brain
47	chr13:50509600-50510000	Flanking Active TSS	Fetal Muscle Leg	muscle
48	chr13:50509600-50510000	Flanking Active TSS	Stomach Smooth Muscle	stomach
49	chr13:50509600-50510200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
50	chr13:50509600-50510200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus

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