Variant report

Variant	rs142782826
Chromosome Location	chr11:33002183-33002184
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:32996304..32999169-chr11:33001880..33003438,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
3	esv34742	chr11:32796092-33004024	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	esv2753057	chr11:32796124-33061724	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	esv2753743	chr11:32796124-33084924	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
6	nsv1040484	chr11:32951066-33093204	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv1046198	chr11:32954100-33075142	Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	esv2762904	chr11:32969258-33586535	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
9	nsv1041149	chr11:32981164-33496670	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
10	nsv1053823	chr11:32981164-33533356	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
11	nsv897194	chr11:32993887-33471804	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
12	nsv975354	chr11:33001257-33006621	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32955600-33003800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:32968200-33003000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:32973000-33003200	Weak transcription	NHLF	lung
4	chr11:32973200-33008600	Weak transcription	HSMMtube	muscle
5	chr11:32975600-33002200	Strong transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:32975800-33003000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:32979600-33009400	Weak transcription	Stomach Mucosa	stomach
8	chr11:32980800-33003000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:32980800-33005400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:32981600-33003400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:32987000-33002200	Weak transcription	Osteobl	bone
12	chr11:32987000-33003000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:32988800-33002200	Weak transcription	Brain Germinal Matrix	brain
14	chr11:32990400-33008800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:32994600-33003200	Weak transcription	Fetal Heart	heart
16	chr11:32995000-33004400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:32995400-33005200	Weak transcription	NHEK	skin
18	chr11:32996000-33002200	Weak transcription	Esophagus	oesophagus
19	chr11:32996000-33002800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:32996000-33003000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:32996000-33005000	Weak transcription	Fetal Stomach	stomach
22	chr11:32996000-33006000	Weak transcription	Left Ventricle	heart
23	chr11:32996000-33006200	Weak transcription	Thymus	Thymus
24	chr11:32996000-33008800	Weak transcription	Ovary	ovary
25	chr11:32996000-33009400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr11:32996000-33010000	Weak transcription	Fetal Intestine Small	intestine
27	chr11:32998000-33003200	Weak transcription	NHDF-Ad	bronchial
28	chr11:32998000-33005200	Weak transcription	Fetal Intestine Large	intestine
29	chr11:32998200-33002200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:32998200-33002200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr11:32998200-33007000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:32998400-33002200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr11:32998400-33002200	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:32998600-33003000	Weak transcription	HMEC	breast
35	chr11:32998600-33004200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:32998600-33006800	Weak transcription	HepG2	liver
37	chr11:32998600-33007000	Weak transcription	Fetal Brain Female	brain
38	chr11:32998600-33007800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr11:32998800-33002600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:32999600-33002200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:32999600-33003800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:33000000-33003000	Weak transcription	NH-A	brain
43	chr11:33000400-33002200	Weak transcription	HSMM	muscle
44	chr11:33000400-33002400	Weak transcription	A549	lung
45	chr11:33000400-33003200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:33000400-33007200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:33000400-33010400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr11:33000600-33002200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr11:33000600-33002200	Weak transcription	Fetal Kidney	kidney
50	chr11:33000600-33002200	Weak transcription	Fetal Lung	lung

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