Variant report

Variant	rs1427905
Chromosome Location	chr5:68118222-68118223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1017305	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2913277	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2913278	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2972422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2972423	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3112430	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55768595	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6863228	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3434869	chr5:68117677-68121030	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68115200-68118600	Weak transcription	Brain Angular Gyrus	brain
2	chr5:68117400-68118600	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:68117400-68118600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr5:68117400-68118600	Weak transcription	Brain Substantia Nigra	brain
5	chr5:68118200-68118800	Enhancers	Fetal Kidney	kidney
6	chr5:68118200-68119200	Enhancers	HepG2	liver
7	chr5:68118200-68120200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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