Variant report

Variant	rs2972423
Chromosome Location	chr5:68112007-68112008
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1017305	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1427905	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2913277	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2913278	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2972422	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3112430	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55768595	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6449973	0.85[ASN][1000 genomes]
rs6863228	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68111000-68113400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:68111000-68113600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:68111000-68113800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:68111200-68113400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:68111200-68113600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:68111200-68113600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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