Variant report

Variant	rs1427954
Chromosome Location	chr5:91170671-91170672
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:91164818..91166462-chr5:91169540..91172351,2	MCF-7	breast:
2	chr5:91165736..91168298-chr5:91169196..91172814,3	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10037971	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10039744	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10041328	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10042631	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10058325	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10063941	0.82[EUR][1000 genomes]
rs10072620	0.90[ASN][1000 genomes]
rs1019740	0.82[EUR][1000 genomes]
rs1019741	0.82[EUR][1000 genomes]
rs10942647	0.91[ASN][1000 genomes]
rs10942648	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10942649	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10942653	0.80[EUR][1000 genomes]
rs12516680	0.90[ASN][1000 genomes]
rs12655533	0.80[EUR][1000 genomes]
rs1366131	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1366132	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1560046	0.90[ASN][1000 genomes]
rs1863951	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1946452	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2114980	0.82[EUR][1000 genomes]
rs2195277	0.82[EUR][1000 genomes]
rs58022129	0.91[ASN][1000 genomes]
rs62368361	0.92[ASN][1000 genomes]
rs62368362	0.90[ASN][1000 genomes]
rs62368363	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6880158	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7703024	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7704835	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7707917	0.92[ASN][1000 genomes]
rs7710172	0.82[EUR][1000 genomes]
rs7716624	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7716965	0.82[EUR][1000 genomes]
rs7719384	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7721652	0.80[EUR][1000 genomes]
rs7722618	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7730541	0.82[EUR][1000 genomes]
rs7736013	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736802	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs825389	0.80[EUR][1000 genomes]
rs825397	0.80[EUR][1000 genomes]
rs825398	0.80[EUR][1000 genomes]
rs825399	0.80[EUR][1000 genomes]
rs9293589	0.90[ASN][1000 genomes]
rs9293590	0.90[ASN][1000 genomes]
rs9293591	0.89[ASN][1000 genomes]
rs9293593	0.82[EUR][1000 genomes]
rs953550	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs979446	0.92[ASN][1000 genomes]
rs979447	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882370	chr5:90986181-91287437	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882372	chr5:91018052-91221647	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1017504	chr5:91092920-91178854	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv830396	chr5:91121355-91343236	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv882373	chr5:91144658-91275313	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv882374	chr5:91144658-91287437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv882375	chr5:91144658-91383848	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91162600-91171200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:91165400-91170800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:91165400-91170800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:91170400-91171600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:91170400-91171600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:91170400-91171800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:91170600-91171000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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