Variant report

Variant	rs953550
Chromosome Location	chr5:91204374-91204375
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10037971	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10039744	0.86[ASN][1000 genomes]
rs10041328	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10042631	0.86[ASN][1000 genomes]
rs10058325	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10072620	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10942647	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10942648	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10942649	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12516680	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1366131	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1366132	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1427954	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1560046	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1863951	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1946452	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58022129	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62368361	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62368362	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62368363	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6880158	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6895098	0.83[EUR][1000 genomes]
rs7703024	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7704835	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7707917	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7716624	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7719384	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7722618	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7736013	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7736802	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9293589	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9293590	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9293591	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs979446	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs979447	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882370	chr5:90986181-91287437	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882372	chr5:91018052-91221647	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv830396	chr5:91121355-91343236	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv882373	chr5:91144658-91275313	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv882374	chr5:91144658-91287437	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv882375	chr5:91144658-91383848	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs953550	OR56B1	trans	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91204200-91204400	Enhancers	A549	lung

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