Variant report

Variant	rs1428358
Chromosome Location	chr5:61215089-61215090
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10054268	1.00[AFR][1000 genomes]
rs1445878	1.00[YRI][hapmap]
rs17462081	1.00[ASN][1000 genomes]
rs34404532	1.00[ASN][1000 genomes]
rs56796760	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72763369	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020693	chr5:61098865-61357032	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881723	chr5:61183375-61311715	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61212800-61216600	Enhancers	Fetal Intestine Small	intestine
2	chr5:61213000-61215200	Enhancers	HSMM	muscle
3	chr5:61213000-61216000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:61213200-61216200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:61213200-61216400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:61213200-61216400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:61213200-61216600	Enhancers	HMEC	breast
8	chr5:61213600-61216400	Enhancers	Fetal Intestine Large	intestine
9	chr5:61213800-61216400	Enhancers	NHEK	skin
10	chr5:61214600-61215200	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr5:61214600-61215600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:61214600-61216000	Enhancers	Rectal Smooth Muscle	rectum
13	chr5:61214800-61215200	Enhancers	Colon Smooth Muscle	Colon
14	chr5:61214800-61215200	Enhancers	Duodenum Mucosa	Duodenum
15	chr5:61214800-61215800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr5:61215000-61215800	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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