Variant report

Variant	rs17462081
Chromosome Location	chr5:61390372-61390373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1428358	1.00[ASN][1000 genomes]
rs61354333	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024090	chr5:61258759-61921150	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv830317	chr5:61298840-61478113	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61389200-61390400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:61389200-61390400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr5:61389200-61390600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:61389400-61390400	Enhancers	NHEK	skin
5	chr5:61389600-61390400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:61389600-61390400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:61389800-61390400	Flanking Active TSS	Brain Hippocampus Middle	brain
8	chr5:61389800-61390400	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr5:61389800-61390600	Enhancers	Colon Smooth Muscle	Colon
10	chr5:61389800-61390600	Enhancers	Fetal Kidney	kidney
11	chr5:61389800-61390800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr5:61390000-61390400	Enhancers	Brain Germinal Matrix	brain
13	chr5:61390000-61390600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:61390000-61391000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:61390200-61390400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:61390200-61390400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:61390200-61390400	Enhancers	Brain Angular Gyrus	brain
18	chr5:61390200-61390400	Flanking Active TSS	Brain Anterior Caudate	brain
19	chr5:61390200-61390400	Enhancers	Brain Cingulate Gyrus	brain
20	chr5:61390200-61390400	Enhancers	Stomach Smooth Muscle	stomach
21	chr5:61390200-61390600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:61390200-61390600	Enhancers	Fetal Brain Male	brain
23	chr5:61390200-61390600	Enhancers	Fetal Brain Female	brain
24	chr5:61390200-61390600	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr5:61390200-61390800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood

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