Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:141736437..141738156-chr2:141740284..141742486,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1030507	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10928087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11886706	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11898300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13411360	1.00[CHB][hapmap]
rs1366806	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16845070	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16845076	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16845080	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16845085	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16845089	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs60047991	0.81[ASN][1000 genomes]
rs72975021	0.85[EUR][1000 genomes]
rs72975031	0.85[EUR][1000 genomes]
rs72975035	0.85[EUR][1000 genomes]
rs72975043	0.85[EUR][1000 genomes]
rs72991752	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72991755	0.81[ASN][1000 genomes]
rs72991770	0.81[ASN][1000 genomes]
rs7574802	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7586607	0.86[CEU][hapmap]
rs979490	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875208	chr2:141657878-141795620	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1014208	chr2:141707558-141790148	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141736000-141737200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr2:141736400-141737200	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search: