Variant report
| Variant | rs16845089 |
|---|---|
| Chromosome Location | chr2:141743077-141743078 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1030507 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10928087 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap] |
| rs11886706 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11898300 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs13411360 | 1.00[CHB][hapmap] |
| rs1366806 | 1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap] |
| rs1429361 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16845070 | 1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap] |
| rs16845076 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16845080 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs16845085 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1997077 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs57278894 | 0.96[EUR][1000 genomes] |
| rs58237958 | 0.96[EUR][1000 genomes] |
| rs60047991 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs60260944 | 1.00[EUR][1000 genomes] |
| rs61374054 | 0.96[EUR][1000 genomes] |
| rs72975033 | 0.96[EUR][1000 genomes] |
| rs72975034 | 0.96[EUR][1000 genomes] |
| rs72975037 | 0.96[EUR][1000 genomes] |
| rs72975041 | 0.96[EUR][1000 genomes] |
| rs72975064 | 0.91[EUR][1000 genomes] |
| rs72981063 | 0.87[EUR][1000 genomes] |
| rs72991752 | 0.90[AMR][1000 genomes] |
| rs72991755 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72991765 | 1.00[EUR][1000 genomes] |
| rs72991770 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72991775 | 1.00[EUR][1000 genomes] |
| rs7574802 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs979490 | 1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv583198 | chr2:141510791-142150620 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1003008 | chr2:141518795-141763505 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875208 | chr2:141657878-141795620 | Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1014208 | chr2:141707558-141790148 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv817518 | chr2:141714174-142287302 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
