Variant report

Variant	rs1429879
Chromosome Location	chr2:209500802-209500803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:209500439..209502356-chr2:209506551..209509488,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10205752	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11899150	0.88[EUR][1000 genomes]
rs11899194	0.88[EUR][1000 genomes]
rs12473851	0.93[EUR][1000 genomes]
rs12477234	0.93[EUR][1000 genomes]
rs12477763	0.85[EUR][1000 genomes]
rs12694117	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13398234	0.91[EUR][1000 genomes]
rs17664172	0.91[EUR][1000 genomes]
rs1835300	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1835301	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1921738	0.92[EUR][1000 genomes]
rs1921739	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2115772	0.91[EUR][1000 genomes]
rs2115773	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2364138	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4021031	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4021032	0.81[EUR][1000 genomes]
rs4675783	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58160491	0.88[EUR][1000 genomes]
rs61496025	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62193738	0.87[EUR][1000 genomes]
rs62193740	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62193742	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62193757	0.85[EUR][1000 genomes]
rs6435469	0.87[EUR][1000 genomes]
rs6435470	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6704637	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7561452	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7566150	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587816	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7592555	0.94[EUR][1000 genomes]
rs7605516	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005292	chr2:209470753-209631662	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv2756959	chr2:209472551-209551952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2759112	chr2:209472551-209551952	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv875753	chr2:209474223-209517915	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv3322275	chr2:209500607-209502555	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3348954	chr2:209500632-209503055	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1429879	KLF7	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209494600-209502400	Weak transcription	K562	blood
2	chr2:209495000-209512800	Weak transcription	Fetal Kidney	kidney

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