Variant report

Variant	rs61496025
Chromosome Location	chr2:209480877-209480878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:209479934..209482294-chr2:209490588..209493253,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10205752	0.90[EUR][1000 genomes]
rs11899150	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11899194	0.99[EUR][1000 genomes]
rs12473851	0.93[EUR][1000 genomes]
rs12477234	0.93[EUR][1000 genomes]
rs12477763	0.95[EUR][1000 genomes]
rs12694117	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13398234	0.90[EUR][1000 genomes]
rs1429879	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17664172	0.90[EUR][1000 genomes]
rs1835300	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1835301	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1921738	0.90[EUR][1000 genomes]
rs1921739	0.90[EUR][1000 genomes]
rs2115772	0.90[EUR][1000 genomes]
rs2115773	0.89[EUR][1000 genomes]
rs2364138	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4675783	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58160491	0.98[EUR][1000 genomes]
rs62193738	0.99[EUR][1000 genomes]
rs62193740	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62193742	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62193757	0.83[EUR][1000 genomes]
rs6435469	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6435470	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6704637	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7561452	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7566150	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7587816	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7592555	0.92[EUR][1000 genomes]
rs7605516	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005292	chr2:209470753-209631662	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv2756959	chr2:209472551-209551952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2759112	chr2:209472551-209551952	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv875753	chr2:209474223-209517915	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209480200-209481200	Active TSS	K562	blood
2	chr2:209480400-209481000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:209480800-209482400	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links