Variant report

Variant	rs143029967
Chromosome Location	chr15:41860983-41860984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BRCA1	chr15:41860114-41861134	H1-hESC	embryonic stem cell:	n/a	n/a
2	MBD4	chr15:41860501-41861129	HepG2	liver:	n/a	n/a
3	HDAC2	chr15:41860613-41861110	H1-hESC	embryonic stem cell:	n/a	chr15:41860993-41861001 chr15:41860812-41860821
4	EP300	chr15:41860651-41861103	HepG2	liver:	n/a	n/a
5	HNF4A	chr15:41860634-41861049	HepG2	liver:	n/a	n/a
6	RAD21	chr15:41860628-41861063	H1-hESC	embryonic stem cell:	n/a	chr15:41861015-41861029
7	REST	chr15:41860628-41861088	HepG2	liver:	n/a	n/a
8	RXRA	chr15:41860619-41861084	HepG2	liver:	n/a	chr15:41860910-41860919
9	TAF1	chr15:41860516-41861040	H1-hESC	embryonic stem cell:	n/a	n/a
10	HEY1	chr15:41859977-41861129	HepG2	liver:	n/a	n/a
11	CCNT2	chr15:41860696-41860984	K562	blood:	n/a	chr15:41860802-41860822
12	NR3C1	chr15:41860671-41861042	A549	lung:	n/a	n/a
13	SP1	chr15:41860510-41861176	HepG2	liver:	n/a	n/a
14	CTCF	chr15:41860860-41861010	HCM	heart:	n/a	chr15:41860894-41860907
15	TBP	chr15:41860601-41861021	HepG2	liver:	n/a	n/a
16	TAF7	chr15:41860406-41861138	H1-hESC	embryonic stem cell:	n/a	n/a
17	TBP	chr15:41860623-41861061	H1-hESC	embryonic stem cell:	n/a	n/a
18	NFIC	chr15:41860573-41861112	HepG2	liver:	n/a	n/a
19	ELF1	chr15:41860627-41861055	HepG2	liver:	n/a	chr15:41860771-41860784
20	CHD2	chr15:41860632-41861053	HepG2	liver:	n/a	n/a
21	EP300	chr15:41860570-41860990	K562	blood:	n/a	n/a
22	NR3C1	chr15:41860720-41861028	A549	lung:	n/a	n/a
23	EP300	chr15:41860524-41861088	HepG2	liver:	n/a	n/a
24	YY1	chr15:41860552-41861086	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr15:41860075-41861242	HepG2	liver:	n/a	n/a
26	ELF1	chr15:41860593-41861001	HepG2	liver:	n/a	chr15:41860771-41860784
27	SIN3A	chr15:41859944-41861076	H1-hESC	embryonic stem cell:	n/a	n/a
28	MYBL2	chr15:41860481-41861158	HepG2	liver:	n/a	n/a
29	NFIC	chr15:41860500-41861044	HepG2	liver:	n/a	n/a
30	TEAD4	chr15:41860443-41861217	HepG2	liver:	n/a	chr15:41860914-41860923 chr15:41860783-41860792
31	MAX	chr15:41860691-41861061	HepG2	liver:	n/a	n/a
32	EP300	chr15:41860650-41861060	H1-hESC	embryonic stem cell:	n/a	n/a
33	RAD21	chr15:41860654-41861077	HepG2	liver:	n/a	chr15:41861015-41861029
34	HNF4G	chr15:41860620-41861058	HepG2	liver:	n/a	n/a
35	HEY1	chr15:41860132-41861071	HepG2	liver:	n/a	n/a
36	FOXA2	chr15:41860554-41861071	HepG2	liver:	n/a	n/a
37	CTCF	chr15:41860860-41861010	HPAF	blood vessel:	n/a	chr15:41860894-41860907
38	FOXA2	chr15:41860642-41861058	A549	lung:	n/a	n/a
39	JUND	chr15:41860631-41861011	HepG2	liver:	n/a	n/a
40	ZBTB7A	chr15:41860520-41861041	HepG2	liver:	n/a	n/a
41	MXI1	chr15:41860626-41861033	HepG2	liver:	n/a	n/a
42	NANOG	chr15:41860697-41860995	H1-hESC	embryonic stem cell:	n/a	n/a
43	HDAC2	chr15:41860586-41861092	HepG2	liver:	n/a	chr15:41860993-41861001 chr15:41860812-41860821
44	MAX	chr15:41860598-41861108	H1-hESC	embryonic stem cell:	n/a	n/a
45	TEAD4	chr15:41860540-41861159	H1-hESC	embryonic stem cell:	n/a	chr15:41860914-41860923 chr15:41860783-41860792
46	GTF2F1	chr15:41859932-41861122	H1-hESC	embryonic stem cell:	n/a	n/a
47	FOXA1	chr15:41860499-41861067	HepG2	liver:	n/a	n/a
48	FOXA1	chr15:41860431-41861032	HepG2	liver:	n/a	n/a
49	TEAD4	chr15:41860536-41861078	K562	blood:	n/a	chr15:41860914-41860923 chr15:41860783-41860792
50	SP1	chr15:41860502-41861147	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
TYRO3	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3436816	chr15:41860414-41861193	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3311137	chr15:41860481-41861176	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3311138	chr15:41860481-41861176	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41852200-41877400	Weak transcription	Aorta	Aorta
2	chr15:41852400-41877200	Weak transcription	Colon Smooth Muscle	Colon
3	chr15:41852600-41877400	Weak transcription	HMEC	breast
4	chr15:41852800-41877400	Weak transcription	NHEK	skin
5	chr15:41853000-41861800	Genic enhancers	Fetal Intestine Large	intestine
6	chr15:41853000-41862000	Genic enhancers	Fetal Intestine Small	intestine
7	chr15:41853200-41861800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr15:41853200-41863200	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:41853200-41872600	Weak transcription	Hela-S3	cervix
10	chr15:41853400-41870600	Weak transcription	Stomach Mucosa	stomach
11	chr15:41853600-41862200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr15:41853800-41861400	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:41853800-41864000	Genic enhancers	Brain Cingulate Gyrus	brain
14	chr15:41854000-41871400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:41854200-41877000	Weak transcription	Fetal Brain Male	brain
16	chr15:41855000-41861400	Genic enhancers	Brain Anterior Caudate	brain
17	chr15:41855400-41862000	Weak transcription	NHLF	lung
18	chr15:41855400-41863400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr15:41855400-41864400	Genic enhancers	Brain Hippocampus Middle	brain
20	chr15:41855400-41877000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:41855400-41877200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr15:41856400-41861800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:41856800-41861400	Genic enhancers	Brain Angular Gyrus	brain
24	chr15:41857200-41862200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:41857400-41864000	Genic enhancers	Brain Inferior Temporal Lobe	brain
26	chr15:41857600-41863200	Weak transcription	Fetal Brain Female	brain
27	chr15:41858200-41861000	Enhancers	Brain Substantia Nigra	brain
28	chr15:41858200-41861400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr15:41858600-41861000	Enhancers	A549	lung
30	chr15:41858600-41861400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:41858600-41861400	Enhancers	Fetal Heart	heart
32	chr15:41858800-41861400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:41858800-41863200	Genic enhancers	Ovary	ovary
34	chr15:41859000-41865400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr15:41859000-41866200	Weak transcription	NHDF-Ad	bronchial
36	chr15:41859000-41869000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:41859200-41861200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
38	chr15:41859200-41861200	Enhancers	Fetal Kidney	kidney
39	chr15:41859400-41861000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:41859600-41861200	Enhancers	Pancreas	Pancrea
41	chr15:41859600-41861200	Enhancers	Placenta Amnion	Placenta Amnion
42	chr15:41859600-41861400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:41859600-41865800	Strong transcription	Stomach Smooth Muscle	stomach
44	chr15:41859600-41868000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:41859800-41861000	Enhancers	H1 Cell Line	embryonic stem cell
46	chr15:41859800-41861200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr15:41859800-41861200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
48	chr15:41859800-41861400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr15:41859800-41861400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:41859800-41861400	Flanking Active TSS	HepG2	liver

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