Variant report

Variant	rs1432837
Chromosome Location	chr5:146762862-146762863
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr5:146762695-146762984	Hela-S3	cervix:	n/a	n/a
2	YY1	chr5:146762738-146762962	H1-hESC	embryonic stem cell:	n/a	chr5:146762864-146762876
3	YY1	chr5:146762245-146762951	H1-hESC	embryonic stem cell:	n/a	chr5:146762864-146762876
4	TBP	chr5:146762240-146763062	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
STK32A	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17106473	0.85[LWK][hapmap]
rs17106607	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.93[YRI][hapmap]
rs61466660	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6580462	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262263	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262266	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262269	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73262283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7714240	0.96[LWK][hapmap];0.95[MKK][hapmap]
rs7732424	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs918796	0.89[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146750000-146766200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:146761800-146765800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:146762200-146763000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr5:146762200-146763000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:146762200-146763000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:146762200-146763000	Active TSS	Brain Anterior Caudate	brain
7	chr5:146762200-146763000	Active TSS	Colon Smooth Muscle	Colon
8	chr5:146762200-146763000	Active TSS	Stomach Smooth Muscle	stomach
9	chr5:146762200-146763000	Active TSS	Hela-S3	cervix
10	chr5:146762200-146763000	Active TSS	NHDF-Ad	bronchial
11	chr5:146762200-146763200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:146762200-146763200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:146762200-146763200	Active TSS	Brain Angular Gyrus	brain
14	chr5:146762200-146763200	Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr5:146762200-146764000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:146762200-146764800	Active TSS	Ovary	ovary
17	chr5:146762400-146763000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr5:146762400-146763000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr5:146762400-146763000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:146762400-146763000	Active TSS	Brain Hippocampus Middle	brain
21	chr5:146762400-146763000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr5:146762400-146763000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr5:146762400-146763000	Active TSS	Rectal Mucosa Donor 29	rectum
24	chr5:146762400-146763000	Active TSS	Right Atrium	heart
25	chr5:146762400-146763200	Active TSS	Rectal Smooth Muscle	rectum
26	chr5:146762400-146764400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr5:146762400-146766200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr5:146762600-146764000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr5:146762600-146766000	Enhancers	Placenta Amnion	Placenta Amnion
30	chr5:146762800-146763000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr5:146762800-146763000	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr5:146762800-146763000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr5:146762800-146763000	Enhancers	Fetal Intestine Small	intestine
34	chr5:146762800-146763400	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr5:146762800-146763600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr5:146762800-146764600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr5:146762800-146767600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:146762800-146767600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr5:146762800-146767600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:146762800-146767600	Weak transcription	Fetal Muscle Trunk	muscle
41	chr5:146762800-146767800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr5:146762800-146770400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr5:146762800-146770400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr5:146762800-146770400	Weak transcription	Fetal Muscle Leg	muscle
45	chr5:146762800-146770600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr5:146762800-146770600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr5:146762800-146770600	Weak transcription	Fetal Stomach	stomach
48	chr5:146762800-146771000	Weak transcription	NHLF	lung
49	chr5:146762800-146772200	Weak transcription	Adipose Nuclei	Adipose
50	chr5:146762800-146772200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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