Variant report

Variant	rs17106473
Chromosome Location	chr5:146716508-146716509
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11957042	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1424291	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1432837	0.85[LWK][hapmap]
rs17106607	0.84[LWK][hapmap]
rs6873038	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7714240	0.81[LWK][hapmap]
rs918796	0.92[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146707600-146725600	Weak transcription	Pancreas	Pancrea
2	chr5:146713000-146716600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:146713800-146720800	Weak transcription	Fetal Kidney	kidney
4	chr5:146715600-146716600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:146715800-146716800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:146715800-146717200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr5:146715800-146717400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:146716000-146716800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:146716200-146716600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:146716200-146717600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:146716200-146717600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:146716400-146716800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:146716400-146716800	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr5:146716400-146716800	Enhancers	Ovary	ovary
15	chr5:146716400-146717000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr5:146716400-146717000	Enhancers	H9 Cell Line	embryonic stem cell
17	chr5:146716400-146717400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr5:146716400-146717600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr5:146716400-146717600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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