Variant report

Variant	rs1432977
Chromosome Location	chr5:147291889-147291890
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10463392	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10477357	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11168004	0.81[AMR][1000 genomes]
rs11168005	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12523585	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12523630	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12651889	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1368409	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1368410	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1368411	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1432976	1.00[ASN][1000 genomes]
rs1432978	0.82[CEU][hapmap];0.87[AMR][1000 genomes]
rs1465404	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1862330	0.85[CEU][hapmap];0.87[YRI][hapmap];0.89[AMR][1000 genomes]
rs1864994	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1864997	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2098649	0.81[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2400440	0.81[CEU][hapmap];0.86[YRI][hapmap];0.89[AMR][1000 genomes]
rs2400441	0.81[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4447974	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4591739	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56252414	0.88[ASN][1000 genomes]
rs56910665	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60172148	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62379461	0.99[ASN][1000 genomes]
rs6580509	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs6580510	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6867813	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6873510	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6877693	0.81[CEU][hapmap];0.81[AMR][1000 genomes]
rs6894752	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs721570	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7709676	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs7716784	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7731860	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7736073	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021356	chr5:147103627-147310531	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1033907	chr5:147109014-147309076	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv537916	chr5:147109014-147309076	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147286800-147293000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:147286800-147293000	Weak transcription	HMEC	breast
3	chr5:147291000-147292000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:147291000-147292000	Enhancers	Liver	Liver
5	chr5:147291000-147292000	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr5:147291000-147292400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:147291400-147292200	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr5:147291800-147292000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:147291800-147292200	Bivalent Enhancer	Adipose Nuclei	Adipose
10	chr5:147291800-147292400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr5:147291800-147292400	Enhancers	Esophagus	oesophagus
12	chr5:147291800-147292400	Enhancers	Gastric	stomach
13	chr5:147291800-147292400	Enhancers	Pancreas	Pancrea

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