Variant report

Variant	rs6873510
Chromosome Location	chr5:147310577-147310578
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10077849	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10463392	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11168004	0.81[AMR][1000 genomes]
rs11168005	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12523585	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12523630	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12651889	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1368409	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1368410	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1368411	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1432976	0.82[ASN][1000 genomes]
rs1432977	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1465404	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1862330	0.81[CEU][hapmap]
rs1864994	0.90[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1864997	0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs2098649	0.97[GIH][hapmap]
rs2400440	0.98[GIH][hapmap]
rs2400441	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34336493	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4447974	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4502808	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4591739	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56252414	0.94[ASN][1000 genomes]
rs56910665	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60172148	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62379461	0.83[ASN][1000 genomes]
rs6580509	0.90[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6580510	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6867813	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6877693	0.93[GIH][hapmap];0.81[MKK][hapmap];0.81[AMR][1000 genomes]
rs6887251	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6894752	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs721570	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7709676	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs7716784	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7721995	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7731860	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1028477	chr5:147255013-147416217	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6873510	GRPEL2	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147307200-147314200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:147308200-147312200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:147309600-147311000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr5:147309600-147311600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:147309800-147311400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr5:147310200-147310600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr5:147310400-147310800	Enhancers	Aorta	Aorta

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